View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_73 (Length: 275)

Name: NF19382_low_73
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_73
NF19382_low_73
[»] chr3 (3 HSPs)
chr3 (1-160)||(38448194-38448353)
chr3 (204-263)||(38448353-38448412)
chr3 (53-119)||(23874330-23874396)
[»] chr1 (2 HSPs)
chr1 (140-263)||(49863616-49863740)
chr1 (20-65)||(4422897-4422942)
[»] chr6 (2 HSPs)
chr6 (34-129)||(33185613-33185708)
chr6 (26-64)||(5041761-5041799)
[»] chr4 (5 HSPs)
chr4 (21-88)||(29553594-29553661)
chr4 (21-65)||(23657637-23657681)
chr4 (19-91)||(43127442-43127514)
chr4 (26-88)||(4640538-4640600)
chr4 (23-83)||(53810065-53810125)
[»] chr7 (5 HSPs)
chr7 (21-88)||(27941348-27941415)
chr7 (21-88)||(33796221-33796288)
chr7 (23-64)||(27723961-27724002)
chr7 (19-99)||(551405-551485)
chr7 (5-65)||(22819555-22819615)
[»] chr2 (3 HSPs)
chr2 (20-90)||(22725287-22725357)
chr2 (26-64)||(41207259-41207297)
chr2 (21-89)||(15017894-15017962)
[»] chr5 (4 HSPs)
chr5 (26-91)||(27324981-27325046)
chr5 (21-89)||(11574548-11574616)
chr5 (36-96)||(18891774-18891834)
chr5 (26-70)||(24408165-24408209)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 38448194 - 38448353
Alignment:
Q  1 ggaagcgtggaaagggcataggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttct 100  Q
    |||||||||||||||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448194 ggaagcgtggaaagggcagaggagattgtgggtgtgggagaaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttct 38448293  T
Q  101 tccgatgggtggcagtggcttttggatcccattggaggatacccacagatatctccaagc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448294 tccgatgggtggcagtggcttttggatcccattggaggatacccacagatatctccaagc 38448353  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 263
Target Start/End: Original strand, 38448353 - 38448412
Alignment:
Q  204 caagaatttgcaccaagtatcatggtcatgcatttatccggttcagggcgacctttgctt 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448353 caagaatttgcaccaagtatcatggtcatgcatttatccggttcagggcgacctttgctt 38448412  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 23874396 - 23874330
Alignment:
Q  53 gaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatgggtggcagtggc 119  Q
    ||||||||||||| | |||||  ||| |||||||||||| |||||||||| |||  |||||||||||    
T  23874396 gaggagtgtaggatattactacatgaagtttctttgcaggctacttcttcggatatgtggcagtggc 23874330  T

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Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 140 - 263
Target Start/End: Complemental strand, 49863740 - 49863616
Alignment:
Q  140 tacccacagatatctccaagccaaa-aaactgttacgtaccagatatgaaactcctagcaccagacaagaatttgcaccaagtatcatggtcatgcattt 238  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  49863740 tacccacagatatctccaagccaaacaaactgttacgtatcagatatgaaactcctagcaccggacaagaatttgcaccaagtatcatggtcatgcgttt 49863641  T
Q  239 atccggttcagggcgacctttgctt 263  Q
    |||||||||||||||||||||||||    
T  49863640 atccggttcagggcgacctttgctt 49863616  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 4422942 - 4422897
Alignment:
Q  20 aggagattgtgggaatgggaggaagagttgttagaggagtgtagga 65  Q
    ||||| ||||||| ||| |||||||||||||||| |||||||||||    
T  4422942 aggaggttgtgggtatgagaggaagagttgttagcggagtgtagga 4422897  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 33185708 - 33185613
Alignment:
Q  34 atgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatgggtggcagtggcttttggatcc 129  Q
    |||||||||||||||| ||||||||||||||||| || |   | ||||||||||||||  ||| |||   |||  |||||||||||||||||||||    
T  33185708 atgggaggaagagttggtagaggagtgtaggaaaatattgcttaatgtttctttgcaggatacatctaatgatatgtggcagtggcttttggatcc 33185613  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 5041799 - 5041761
Alignment:
Q  26 ttgtgggaatgggaggaagagttgttagaggagtgtagg 64  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  5041799 ttgtgggtgtgggaggaagagttgttagaggagtgtagg 5041761  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 29553594 - 29553661
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 88  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||   |||| | |||||||||||||    
T  29553594 ggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgtttctttg 29553661  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 23657681 - 23657637
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtagga 65  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||    
T  23657681 ggagattgtgggcgtgggaggaggagttgttagaggagtgtagga 23657637  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 43127442 - 43127514
Alignment:
Q  19 taggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcag 91  Q
    |||||| |||||||  ||||||||||||||  ||||||||||||||  | ||||  |||||||||||||||||    
T  43127442 taggagtttgtgggtgtgggaggaagagttactagaggagtgtaggttattacttgctgatgtttctttgcag 43127514  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 4640538 - 4640600
Alignment:
Q  26 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 88  Q
    |||||||  |||||||| || |||||||||||||||||||  ||||||| |||||| ||||||    
T  4640538 ttgtgggcttgggaggaggacttgttagaggagtgtaggactctactatttgatgtctctttg 4640600  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 53810125 - 53810065
Alignment:
Q  23 agattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgttt 83  Q
    ||||||||||  |||||||||||  ||||||||||||||||||   |||||| ||||||||    
T  53810125 agattgtgggcgtgggaggaagatatgttagaggagtgtaggacgttactatttgatgttt 53810065  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 27941348 - 27941415
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 88  Q
    ||||||||||||  |||||||| ||||||||||||||||||| ||   |||| | |||||||||||||    
T  27941348 ggagattgtgggcgtgggaggaggagttgttagaggagtgtaagactttactgtttgatgtttctttg 27941415  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 33796221 - 33796288
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 88  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||   |||| | |||||||||||||    
T  33796221 ggagactgtgggcgtgggaggaagagatgttagaggagtgtaggactttactgtttgatgtttctttg 33796288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 27723961 - 27724002
Alignment:
Q  23 agattgtgggaatgggaggaagagttgttagaggagtgtagg 64  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  27723961 agattgtgggcatgggaggaagacttgttaggggagtgtagg 27724002  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 551405 - 551485
Alignment:
Q  19 taggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttc 99  Q
    |||||| |||||||  |||||||| ||  | |||| ||||||||||  | |||| ||||||||||||||||||||| ||||    
T  551405 taggaggttgtgggtgtgggaggaggaacttttagcggagtgtaggttattactttctgatgtttctttgcagcctccttc 551485  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 22819555 - 22819615
Alignment:
Q  5 gcgtggaaagggcataggagattgtgggaatgggaggaagagttgttagaggagtgtagga 65  Q
    |||||| || ||| |||||| |||||||  |||||||| |||||||||| |||||||||||    
T  22819555 gcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagga 22819615  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 22725287 - 22725357
Alignment:
Q  20 aggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgca 90  Q
    |||||||| ||||  |||||||| ||| ||||||||||||||||||   |||||| |||||||||| ||||    
T  22725287 aggagattatgggtttgggaggaggagatgttagaggagtgtaggactttactatttgatgtttctctgca 22725357  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 41207297 - 41207259
Alignment:
Q  26 ttgtgggaatgggaggaagagttgttagaggagtgtagg 64  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  41207297 ttgtgggcatgggaggaagagttggtagaggagtgtagg 41207259  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 15017962 - 15017894
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgc 89  Q
    ||||||||||||  |||||||| ||| |||||||||||||||||   || || | ||||||||||||||    
T  15017962 ggagattgtgggtgtgggaggaggagatgttagaggagtgtagggctcttctgtttgatgtttctttgc 15017894  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 27325046 - 27324981
Alignment:
Q  26 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcag 91  Q
    |||||||  |||||||||| |||||||| ||||||||||| | ||||   ||||||||||||||||    
T  27325046 ttgtgggcttgggaggaagtgttgttagcggagtgtaggacattacttcttgatgtttctttgcag 27324981  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 11574548 - 11574616
Alignment:
Q  21 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgc 89  Q
    ||||||||||||  |||||||| ||| |||||||||||||||||   || || | ||||||||||||||    
T  11574548 ggagattgtgggcgtgggaggaggagatgttagaggagtgtagggctcttctgtttgatgtttctttgc 11574616  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 18891774 - 18891834
Alignment:
Q  36 gggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctac 96  Q
    ||||||| |||  ||||| ||||||||||  |||| |||||||||||||||||||| ||||    
T  18891774 gggaggaggagaagttagtggagtgtaggttactattatctgatgtttctttgcagtctac 18891834  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 24408209 - 24408165
Alignment:
Q  26 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaacta 70  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||    
T  24408209 ttgtgggcttgggaggaagagttggtagaggagtgtagggaacta 24408165  T

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