View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_74 (Length: 269)
Name: NF19382_low_74
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 42928120 - 42928308
Alignment:
| Q |
13 |
aatatttagctttgagtaatttagtgattaaagaattcggacttgttactaatttccaagcttgcttgccaatcatagcaatgttgaaagctttgagatt |
112 |
Q |
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| T |
42928120 |
aatatttagctttgagtaatttagtgattaaagaattcggacttgttactagtttccaagcttgcttgccaatcatagccatgtttaaagctttgagatt |
42928219 |
T |
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| Q |
113 |
cttgaatcccatactgccgaagctcttcggagttgaaacacgctcccatgacatccagtgaattcctttagaatttgtggcatcatgac |
201 |
Q |
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| T |
42928220 |
cttgaatcccatactgccgaagctcttcggagttgaaagacgctcccatgacatccagtgaattcctttagaatttgtggcattatgac |
42928308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 42928309 - 42928342
Alignment:
| Q |
220 |
gcatcttctctatttcatgtaagcactttaatat |
253 |
Q |
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| T |
42928309 |
gcatcttctctatttcatgtaagcactttaatat |
42928342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 12996018 - 12995983
Alignment:
| Q |
13 |
aatatttagctttgagtaatttagtgattaaagaat |
48 |
Q |
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| T |
12996018 |
aatatttagctttgagtaatttagtgatcaaagaat |
12995983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 22698970 - 22699005
Alignment:
| Q |
13 |
aatatttagctttgagtaatttagtgattaaagaat |
48 |
Q |
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| T |
22698970 |
aatatttagctttgagtaatttagtgatcaaagaat |
22699005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 30470053 - 30470088
Alignment:
| Q |
13 |
aatatttagctttgagtaatttagtgattaaagaat |
48 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
30470053 |
aatatttagctttgagtaatttagtgatcaaagaat |
30470088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 45275657 - 45275692
Alignment:
| Q |
13 |
aatatttagctttgagtaatttagtgattaaagaat |
48 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
45275657 |
aatatttagctttgagtaatttagtgatcaaagaat |
45275692 |
T |
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