View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19382_low_76 (Length: 257)
Name: NF19382_low_76
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_76 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26496787 - 26496546
Alignment:
| Q |
1 |
ccttgtgactgaagaaataccactcattttgtggccctgatccaatcctacacttatctgcaacaagtacgcacacacaaaactattcaatttaacacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26496787 |
ccttgtgactgaagaaataccactcattttgtggccctgatccaatcctacacttatctgcaacaagtacgcacacacaaaactattaaatagaacacaa |
26496688 |
T |
|
| Q |
101 |
aattaagaggttaacaatgatgtttaattaattcatcttagaaaactcctaaatatgtagcacatacacttaagattgaaggcatatctggtgtccgatg |
200 |
Q |
| |
|
||||| ||| | | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
26496687 |
aattatgagatgagtaatgatgtttaattagttcatcttagaaaactc---tatatgtagcacatacacttaagactgaaggcatgtctggtgtccgatg |
26496591 |
T |
|
| Q |
201 |
tcaagataaaaccaacacatgcgtttgcattcaattacatatatt |
245 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26496590 |
tcaagataaaaccaacacatgcgattgcattcaattacatatatt |
26496546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12276568 - 12276535
Alignment:
| Q |
1 |
ccttgtgactgaagaaataccactcattttgtgg |
34 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
12276568 |
ccttgtgactgaagaaataccactcgttttgtgg |
12276535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University