View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_79 (Length: 255)
Name: NF19382_low_79
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 3236058 - 3235848
Alignment:
| Q |
1 |
catagttcattttgagaaaaatcaaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgtttgtataattgtgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
3236058 |
catagttcattttgagaaaaatcaaatttgttgctaacaaggtcaaggtgggagaaaaacattgagaagggacacatagaattgcttgtataagtgtgat |
3235959 |
T |
|
| Q |
101 |
tcagatttcaaagtgaagttttgaagaaaattcttgaagtcaagaattgggttcatcaacatatgnnnnnnngtttcttttccggaaattatttcgacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| |
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| T |
3235958 |
tcagatttcaaagtgaagttttgaagaaaattcttgaagtcaagaattgggttcatcaacataagtttttt--tttgttttccggaaattatttcgacat |
3235861 |
T |
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| Q |
201 |
atgttgttgattc |
213 |
Q |
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||||||||||||| |
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| T |
3235860 |
atgttgttgattc |
3235848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Original strand, 3236244 - 3236274
Alignment:
| Q |
211 |
ttcttctctctcagaatttatctcactatac |
241 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3236244 |
ttcttctctctcagaatttatctcactatac |
3236274 |
T |
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