View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_81 (Length: 253)
Name: NF19382_low_81
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 41825826 - 41825585
Alignment:
| Q |
1 |
aaatttcacccatttcaacctttgtttttcaatctcaaatgcttccacatgatagtttacctgttcttctcctaattgcaccaccctcttcttcatccat |
100 |
Q |
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| T |
41825826 |
aaatttcacccatttcaacctttgtttttcaatctcaaatgcttccacatgatagtttacctgttcttctcctaattgcaccaccttcttcttcatccat |
41825727 |
T |
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| Q |
101 |
tgctttttctcccaacaactcttcactccatcttgcaacacactcatcacttcactactcaactgttgcatcacttgtgatggcaatgatgaaacttttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825726 |
tgctttttctcccaacaactcttcactccatcttgcaacacactcatcacttcactactcaactgttgcatcacttgtgatggcaatgatgaaacttttc |
41825627 |
T |
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| Q |
201 |
ttgattttttccttaagtgatcaatattttcatcttcttcat |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825626 |
ttgattttttccttaagtgatcaatattttcatcttcttcat |
41825585 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 26919489 - 26919537
Alignment:
| Q |
95 |
atccattgctttttctcccaacaactcttcactccatcttgcaacacac |
143 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||| |
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| T |
26919489 |
atccattgctttttctcccaagtactcttacctccatcttgaaacacac |
26919537 |
T |
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