View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19382_low_90 (Length: 240)

Name: NF19382_low_90
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19382_low_90
NF19382_low_90
[»] chr8 (5 HSPs)
chr8 (13-196)||(38452109-38452292)
chr8 (13-92)||(38634384-38634460)
chr8 (124-196)||(38634489-38634563)
chr8 (130-196)||(39851502-39851567)
chr8 (13-65)||(39851407-39851459)
[»] chr4 (1 HSPs)
chr4 (139-192)||(44476023-44476076)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 38452292 - 38452109
Alignment:
Q  13 ttattctcaatacatcttaacttgttacactttatttcatttatcttattattactcactagcaaaatcatctcagcatggccactgttggtccccttct 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38452292 ttattcttaatacatcttaacttgttacactttatttcatttatcttattattattcactagcaaaatcatctcagcatggccactgttggtccccttct 38452193  T
Q  113 agctccattcctgaatgttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38452192 agctccattcctgaatgttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 38452109  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 38634384 - 38634460
Alignment:
Q  13 ttattctcaatacatcttaacttgttacactttatttcatttatcttattattactcactagcaaaatcatctcagcatg 92  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||   |||| ||||||| ||||||||||||    
T  38634384 ttattttcaaaacatcttaacttgttacactttatttcatttatcttattat---tcacaagcaaaaacatctcagcatg 38634460  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 38634489 - 38634563
Alignment:
Q  124 tgaatgttagaggtgacaaacatcttattcaca--ttttctgtttagtttagacttcaaactattcatcatgatt 196  Q
    |||||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||  |||||||||||||    
T  38634489 tgaatgttagaggtgacaaacatcttattcacattttttccatttagtttagacttcaaaacattcatcatgatt 38634563  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 39851502 - 39851567
Alignment:
Q  130 ttagaggtgacaaacatcttattcacattttctgtttagtttagacttcaaactattcatcatgatt 196  Q
    ||||| |||||| ||||||||||||||||||| |||| ||| ||||||||||  |||||||||||||    
T  39851502 ttagaagtgacagacatcttattcacattttc-gttttgttgagacttcaaaacattcatcatgatt 39851567  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 39851407 - 39851459
Alignment:
Q  13 ttattctcaatacatcttaacttgttacactttatttcatttatcttattatt 65  Q
    |||||||||  ||||||||||||||||||  |||||| |||||||||||||||    
T  39851407 ttattctcataacatcttaacttgttacatattattttatttatcttattatt 39851459  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 44476023 - 44476076
Alignment:
Q  139 acaaacatcttattcacattttctgtttagtttagacttcaaactattcatcat 192  Q
    |||||||||||||||| |||||| |||||||| ||||||||||  |||||||||    
T  44476023 acaaacatcttattcatattttccgtttagttgagacttcaaatcattcatcat 44476076  T

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