View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_96 (Length: 227)
Name: NF19382_low_96
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_96 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34446356 - 34446581
Alignment:
| Q |
1 |
aaaatagtcacatgaggttagaaacttgatgaatagaagaagcccttttgaggcacaaaagaggaaattatttcccaaattgacaatgacaatgtaggcc |
100 |
Q |
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| T |
34446356 |
aaaatagtcacatgaggttagaaacttgatgaatagaa-aagcccttttgaggcacaaaagaggaaattatttcccaaattgacaatgacaatgtaggcc |
34446454 |
T |
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| Q |
101 |
acaaaagagacctaaaagaacatgctttaaagccacttgaagtgagaatgaatgtcctttggaaacaacaaaaacaattgacccctcaggtgatggctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34446455 |
acaaaagagacctaaaagaacatgctttaaagccacttgaagtgagaatgaatgtcctttggaaacaacaaaaagaattgacccctcaggtgatggctat |
34446554 |
T |
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| Q |
201 |
aaaatgatagattctcaaactctcttt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34446555 |
aaaatgatagattctcaaactctcttt |
34446581 |
T |
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