View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_97 (Length: 226)
Name: NF19382_low_97
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 40662578 - 40662721
Alignment:
| Q |
63 |
ctaaatggacacacattcctaaaactaaggttaactacatactccatcaataatacggatcggaaacgggtttggtacagtttacaccgtgcaatagaat |
162 |
Q |
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| T |
40662578 |
ctaaatggacacacattcctaaaactaagggtaactacatactccatcaataatacg-atcggaaacgggtttggtacagtttacaccgtgcaatagaat |
40662676 |
T |
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| Q |
163 |
ccaagatgttgtgttgtagatattttgtgaaatttcaaggctaag |
207 |
Q |
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| T |
40662677 |
ccaagatgttgtgctgcagatattttgtgaaatttcaaagctaag |
40662721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 40662503 - 40662560
Alignment:
| Q |
20 |
atcttgaaatataaataattcatacataaattgagatcacaagctaaatggacacaca |
77 |
Q |
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| T |
40662503 |
atcttgaactataaataattcatacataaattgagatcacaagctaaatgaacacaca |
40662560 |
T |
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