View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_98 (Length: 224)
Name: NF19382_low_98
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 15776456 - 15776661
Alignment:
| Q |
1 |
aatagaggcaagaaaatattaaagcaaaatatttttctatgtaatttcattttatcagtcattgacaaacataattgaaagattgtggttcaatatatac |
100 |
Q |
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| T |
15776456 |
aatagaggcaagaaaatattaaagcaaaatatttttctatgtaatttcattttatcagtcattgacaaacataattgaaagattgtggttcaatatatac |
15776555 |
T |
|
| Q |
101 |
tctgttat-nnnnnnnttatggttaataaattaaatgttactaattaatatccaaccaagaattgatagtatgtttgcaacatccaaatcctgtcaacaa |
199 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
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| T |
15776556 |
tctgttataaaaaaaattatggttaataaattacatgttactaattaatatccaaccaagaattgatagtatggttgcaccatccaaatgctgtcaacaa |
15776655 |
T |
|
| Q |
200 |
agaaat |
205 |
Q |
| |
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|||||| |
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| T |
15776656 |
agaaat |
15776661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29064332 - 29064126
Alignment:
| Q |
1 |
aatagaggcaagaaaatattaaagcaaaatatttttctatgtaatttcattttatcagtcattgacaaacataattgaaagattgtggttcaatatatac |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29064332 |
aatagaggcaaggaaatattaaagcaaaatatttttctatgtaatttaattttatgagtcattgacaaacataattgaaagattgtggttcaatatatac |
29064233 |
T |
|
| Q |
101 |
tctgttat--nnnnnnnttatggttaataaattaaatgttactaattaatatccaaccaagaattgatagtatgtttgcaacatccaaatcctgtcaaca |
198 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
29064232 |
tctgttataaaaaaaaattatggttaataaattaaatgttactaattaatatccaaccaagaattgatagtatgtttgcaccatccaaatgctgtcaaca |
29064133 |
T |
|
| Q |
199 |
aagaaat |
205 |
Q |
| |
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||||||| |
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| T |
29064132 |
aagaaat |
29064126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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