View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19382_low_99 (Length: 222)
Name: NF19382_low_99
Description: NF19382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19382_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 28179362 - 28179542
Alignment:
| Q |
22 |
catgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacat |
121 |
Q |
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| T |
28179362 |
catgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacat |
28179461 |
T |
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| Q |
122 |
gtatgtgtctttgataatgatatcacatcttatagaatttggaatccatgtattaaagccgtaaagtagcatgacggacattca |
205 |
Q |
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| T |
28179462 |
gtgtgtgtctttgataatggtatca---cctatagaatttggaatccatgtattaaagccgtaaagtagcatgacggatattca |
28179542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 28154818 - 28154975
Alignment:
| Q |
46 |
ctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacatgtatgtgtctttgataatgatatc |
145 |
Q |
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| T |
28154818 |
ctggaggatatgcggttcaattctatactgcacaatgcacttctgaaaaatgaatggatccatgtagagattacatgcaggt--ctttgatgatgacaac |
28154915 |
T |
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| Q |
146 |
acatcttatagaatttggaatccatgtattaaagccgtaaagtagcatgacggacattca |
205 |
Q |
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| T |
28154916 |
actcgttacagattttggaatccatgtattaaagcagaaaagtagcatggcggatattca |
28154975 |
T |
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