View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_high_12 (Length: 304)
Name: NF19383_high_12
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 30501510 - 30501656
Alignment:
| Q |
153 |
caaaagtataacattcatttaacagtccaatattaccactattttcatgattttgtaaagtctaataaaacaaatgattcattacctgctttgagtatgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30501510 |
caaaagtataacattcatttaacagtccaatattaccactattttcatgattttgtaaagtctaataaaacaaatgtttcattacctgctttgagtatgt |
30501609 |
T |
|
| Q |
253 |
caaaatcttatcatattccctcctctcagcaaaagctgcaataacct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30501610 |
caaaatcttatcatattccctcctctcagcaaaagctgcaataacct |
30501656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 153 - 299
Target Start/End: Original strand, 30541853 - 30541999
Alignment:
| Q |
153 |
caaaagtataacattcatttaacagtccaatattaccactattttcatgattttgtaaagtctaataaaacaaatgattcattacctgctttgagtatgt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30541853 |
caaaagtataacattcatttaacagtccaatattaccactattttcatgattttgtaaagtctaataaaacaaatgtttcattacctgctttgagtatgt |
30541952 |
T |
|
| Q |
253 |
caaaatcttatcatattccctcctctcagcaaaagctgcaataacct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30541953 |
caaaatcttatcatattccctcctctcagcaaaagctgcaataacct |
30541999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 30501373 - 30501445
Alignment:
| Q |
16 |
cactaacctgggcatctgtttgcaatattgtttgcagaaggaatatgtaatcaagagtgtatccaacctgcag |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30501373 |
cactaacctgggcatctgtttgcaatattgtttgcagaaggaatatgtaatcaagagtgtatccaacctgcag |
30501445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 30541716 - 30541788
Alignment:
| Q |
16 |
cactaacctgggcatctgtttgcaatattgtttgcagaaggaatatgtaatcaagagtgtatccaacctgcag |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30541716 |
cactaacctgggcatctgtttgcaatattgtttgcagaaggaatatgtaatcaagagtgtatccaacctgcag |
30541788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University