View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_high_22 (Length: 227)
Name: NF19383_high_22
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 47557860 - 47558024
Alignment:
| Q |
16 |
ttatagcgccattatgttaagcattggatgttggcatagtggtttagcacctttgttttcaccagaattaaggggttgattcttatattttgcattttga |
115 |
Q |
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| T |
47557860 |
ttatagtgccattatgttaagcattggatgttggaacagtggtttagcgcctttgttttcaccagaattaaggggttgattcttatattttgcattttga |
47557959 |
T |
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| Q |
116 |
tgtcttattttttatccttgcacgaggaaaaataaaggagatgcaaaaatagtaactccagcact |
180 |
Q |
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| T |
47557960 |
tgtcttattttttatccttgcacgagcaaaaataaaggagatgcaaaaatagtaactccagcact |
47558024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 47558070 - 47558115
Alignment:
| Q |
182 |
aagtataaattttatattataactcatatcgtatactattctaaaa |
227 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47558070 |
aagtgtaaattttatattataactcatatcgtatactattctaaaa |
47558115 |
T |
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