View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_high_24 (Length: 218)
Name: NF19383_high_24
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_high_24 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 13870904 - 13871116
Alignment:
| Q |
6 |
cagagaatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaagaccagtcccgag |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13870904 |
cagacaatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaaggccagtcccgag |
13871003 |
T |
|
| Q |
106 |
acttttccatagaaggctcttgagaattgacatgatttgaagccacatcacttcatccgtctcttgcttctcgcttccagtgtccttgtcaacctgtgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13871004 |
acttttccatagaaggctcttgagaattaacatgatttgaagccacatcacttcatccgtctcttgcttctcgcttccagtgtcctagtcaacctgtgta |
13871103 |
T |
|
| Q |
206 |
tgtagttatgagc |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13871104 |
tgtagttatgagc |
13871116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 14011029 - 14011241
Alignment:
| Q |
6 |
cagagaatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaagaccagtcccgag |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14011029 |
cagacaatgtgactaggtgccgtggactccacagccgacaacgatacaccatggtgaaggttagaagacaagtcagtagggttgtaaggccagtcccgag |
14011128 |
T |
|
| Q |
106 |
acttttccatagaaggctcttgagaattgacatgatttgaagccacatcacttcatccgtctcttgcttctcgcttccagtgtccttgtcaacctgtgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14011129 |
acttttccatagaaggctcttgagaattaacatgatttgaagccacatcacttcatccgtctcttgcttctcgcttccagtgtcctagtcaacctgtgta |
14011228 |
T |
|
| Q |
206 |
tgtagttatgagc |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14011229 |
tgtagttatgagc |
14011241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University