View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_high_4 (Length: 474)
Name: NF19383_high_4
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Complemental strand, 10192934 - 10192492
Alignment:
| Q |
15 |
tcaccattttctcattcaaagaattcaactccttcattttgctctagctnnnnnnnttctactccctcaaattcttccttcacaatcatcaccatgaaat |
114 |
Q |
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| T |
10192934 |
tcaccattttctcattcaaagaactcaactccttcattttgctctagctcccccccttctactccctcgaattcttccttcacaatcatcaccatgaaat |
10192835 |
T |
|
| Q |
115 |
gttttacaaacatgtgaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcgccttgttcttattagc |
214 |
Q |
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| T |
10192834 |
gttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcgccttgttcttattagc |
10192735 |
T |
|
| Q |
215 |
cacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcacatgtccatgttgatctt |
314 |
Q |
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| T |
10192734 |
cacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcacatgtccatgtagatctt |
10192635 |
T |
|
| Q |
315 |
cctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatttctttttctgtatttt |
414 |
Q |
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| T |
10192634 |
cctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatttctttttctgtatttt |
10192535 |
T |
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| Q |
415 |
acatatctgttctcactattttagtttggaatagccgtggggt |
457 |
Q |
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| T |
10192534 |
acatatctgttctctctattttagtttggtatagctgtggggt |
10192492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 19460816 - 19460969
Alignment:
| Q |
169 |
ctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgtt |
268 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || ||||| | ||| |||||||||| ||||| ||||||||||||| | |||||| |
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| T |
19460816 |
ctccttctgaaatagatcaaatcctcttccccttgttcttatcagtcacttat---ttattactgattctattgacagaatttgttaccctgccaatgtt |
19460912 |
T |
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| Q |
269 |
ggtagcttggttgctaagagttccttcacatgtccatgttgatcttcctggttcttg |
325 |
Q |
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| T |
19460913 |
ggtagcttggttgcggagagttccttcacatctctgtgtagatcttcctggttcttg |
19460969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 362 - 457
Target Start/End: Original strand, 19461064 - 19461159
Alignment:
| Q |
362 |
tgttgatattgatatatgcccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggt |
457 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| | ||||| ||||||| |
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| T |
19461064 |
tgttgatattgatgtatgaacaaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggt |
19461159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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