View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_high_5 (Length: 464)
Name: NF19383_high_5
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 45 - 458
Target Start/End: Original strand, 4411655 - 4412068
Alignment:
| Q |
45 |
aagttttgttcgagaatgctgatagtagtttttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411655 |
aagttttgttcgagaatgctgatagtagtctttattttactcaggtggacagtcaatatagtcaatgtttggatgagattcacactgtcgtatctgcatt |
4411754 |
T |
|
| Q |
145 |
tcatgctgctactgagctcgatccacaaatacatgcgcactttgctgtcaaaacggtttctcaactatataaggacttgagagagaggattagcaaacat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411755 |
tcatgctgctactgagctcgatccacaaatacacgcgcactttgctgtcaaaacggtttctcgactatataaggacttgagagagaggattagcaaacat |
4411854 |
T |
|
| Q |
245 |
attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411855 |
attctttccatgggatcaaattttaacagttcatggtcagaagaggataaggaattatctgttgaaacttcattcattcaaaagcaatgggctcttcaac |
4411954 |
T |
|
| Q |
345 |
agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4411955 |
agttgaaaaggaaagatcagttatggaggccccaaaggggcttgccagaaagatctgtttccgttctacgtgattggatgtttcagaatttcctccatcc |
4412054 |
T |
|
| Q |
445 |
gtaagtattatcta |
458 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4412055 |
gtaagtattatcta |
4412068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 4411387 - 4411425
Alignment:
| Q |
15 |
caacaccctcttaggaagaaaatcaaaattaagttttgt |
53 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4411387 |
caacaccctcttaggcagaaaatcaaaattaatttttgt |
4411425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University