View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_low_1 (Length: 702)
Name: NF19383_low_1
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Complemental strand, 54985978 - 54985440
Alignment:
| Q |
14 |
aaaatacagattcagcatccaatatcacctcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgta |
108 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54985978 |
aaaatacagattcagcatcctatatcaactcaatctactatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgta |
54985879 |
T |
|
| Q |
109 |
gtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985878 |
gtcttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgctt |
54985779 |
T |
|
| Q |
209 |
caccaagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagc |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985778 |
caccaagcaagaattttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagc |
54985679 |
T |
|
| Q |
309 |
cgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattct-cattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttact |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985678 |
cgcaacatgcccaattgtatgtgccacagcaacctgcagtttaaattctccattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttact |
54985579 |
T |
|
| Q |
408 |
tgatgcaaaagtctcatattctagttttagtatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaacatagtgtggcacat |
507 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985578 |
tgatgcaaaagtctcatattctagctttaatatagtctatgtttggctacaatttcggagaggaaaaaattaattctagaactaacatagtgtggcacat |
54985479 |
T |
|
| Q |
508 |
ttagaagataaatgtgtcccttaagcatgtggtcatggt |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985478 |
ttagaagataaatgtgtcccttaagcatgtggtcatggt |
54985440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 565 - 660
Target Start/End: Complemental strand, 54985444 - 54985349
Alignment:
| Q |
565 |
atggtagagcactttttaaaagaggtaagctcccgtagatctccgtatcttgaaggattagtctcttactttctacttgggatactttggccaacc |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54985444 |
atggtagagcactttttaaaagaggtaagctcccgtagatctccgtatcttgaaggattagtctcttactttctacttgggatactttggccaacc |
54985349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 113 - 343
Target Start/End: Complemental strand, 7883437 - 7883207
Alignment:
| Q |
113 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
212 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||| | | ||| ||||||||| | | |||||| ||||| || |
|
|
| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
213 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
312 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
|
| Q |
313 |
acatgcccaattgtatgtgccacagcaacct |
343 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |
|
|
| T |
7883237 |
acatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 112 - 349
Target Start/End: Complemental strand, 18396224 - 18395987
Alignment:
| Q |
112 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
211 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
|
|
| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
212 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
311 |
Q |
| |
|
| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
|
|
| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
312 |
aacatgcccaattgtatgtgccacagcaacctgcagtt |
349 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| |||| |
|
|
| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacctgaagtt |
18395987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University