View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_low_10 (Length: 331)
Name: NF19383_low_10
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 31464209 - 31464511
Alignment:
| Q |
18 |
acatcctggtcgaaatagggtggcatggcccactttgccccttcatagttcatttcatgtgaaaatgtttatatggtgttaaaaatgttggttttagtnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464209 |
acatcctggtcgaaatagggtggcatggcccactttgccccttcata-------tcatgtgaaaatgtttatatggtgttaaaaatgttggttttagtaa |
31464301 |
T |
|
| Q |
118 |
nnnnnnnnncattatggaaaggaaaacgtgaaagagaagggtctaatcttcactaacgtgaccggttaaagtacaaa--ttagctgaaagaaatatttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31464302 |
aaaaaa---cattatggaaaggaaaacgtgaaagagaagggtctaatcttcactaacgtgaccggttaaagtacaaattttagctgaaagaaatatttat |
31464398 |
T |
|
| Q |
216 |
agttaagtgtttaatgcttctcaaatgatattagtttaagtaaattaatatgtgnnnnnnngtgttcatgctcaagtatagctaattagtcttataacgg |
315 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
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| T |
31464399 |
agtt-agtgtttaatgcttctcaaatgatattagtttaagtaaattaatatgtgaaaaaaagttttcatgctcaagtatagctaattagtcttttaacgg |
31464497 |
T |
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| Q |
316 |
ctataataaatgga |
329 |
Q |
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|||||||||||||| |
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| T |
31464498 |
ctataataaatgga |
31464511 |
T |
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