View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_low_11 (Length: 331)
Name: NF19383_low_11
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 37915932 - 37915619
Alignment:
| Q |
18 |
ccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915932 |
ccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacat |
37915833 |
T |
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| Q |
118 |
caagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcact |
217 |
Q |
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| T |
37915832 |
caagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcact |
37915733 |
T |
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| Q |
218 |
cttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagca |
317 |
Q |
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| T |
37915732 |
cttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagca |
37915633 |
T |
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| Q |
318 |
agacagtttccaaa |
331 |
Q |
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|||||||||||||| |
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| T |
37915632 |
agacagtttccaaa |
37915619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 37907779 - 37907469
Alignment:
| Q |
18 |
ccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacat |
117 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37907779 |
ccatctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacat |
37907680 |
T |
|
| Q |
118 |
caagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcact |
217 |
Q |
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| T |
37907679 |
caagtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcact |
37907580 |
T |
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| Q |
218 |
cttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagca |
317 |
Q |
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||| ||||||||||||||| || |||||||||||| | ||| ||||||||||||| |||||||||||||||| |||||||| || ||||||| ||| |
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| T |
37907579 |
cttaaaatctcttatcttcttttaaatagcatttgctg---caacaataccatctttttcaactaactcacccctttttacaaccacgttataagaggca |
37907483 |
T |
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| Q |
318 |
agacagtttccaaa |
331 |
Q |
| |
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| ||| |||||||| |
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| T |
37907482 |
acacaatttccaaa |
37907469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 37960266 - 37960576
Alignment:
| Q |
21 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
120 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||||| || || |||||||||||||| |||||||||||| | | |
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| T |
37960266 |
tctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagcca |
37960365 |
T |
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| Q |
121 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
220 |
Q |
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||| || || |||| ||||| | ||||| ||||| |||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| |||||| |
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| T |
37960366 |
atttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctt |
37960465 |
T |
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| Q |
221 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaactacagtataagaagcaaga |
320 |
Q |
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|||| |||||||||| ||| ||| || ||| ||| || ||| |||| |||||||| ||||||| | || |||||| | || |||||||| |||||| |
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| T |
37960466 |
taaatgtcttatcttcttttcgataccaattgaagccgaaacaatcccattttttccaattaactcatctctctttacagccacggtataagatgcaaga |
37960565 |
T |
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| Q |
321 |
cagtttccaaa |
331 |
Q |
| |
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|| |||||||| |
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| T |
37960566 |
caatttccaaa |
37960576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 37954458 - 37954552
Alignment:
| Q |
22 |
ctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaaca |
116 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||| |||||||| || || ||||| |||||||| |||||||||||| |
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| T |
37954458 |
ctctacaatcagaaagagaaatcgaaccggatgaatcaagatgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaaca |
37954552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 3783880 - 3783791
Alignment:
| Q |
212 |
atcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttccaactaactcacccctatttacaac |
301 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||||| ||| ||| ||| |||| | |||||||||||||| |||| |||||||| |
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| T |
3783880 |
atcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgttccaactaactcagccctctttacaac |
3783791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 3784083 - 3783960
Alignment:
| Q |
18 |
ccatctctacaatcagaaagagaaatcgaactgga------cgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcat |
111 |
Q |
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|||||||||||||||||||||||||| ||| | || |||||||| ||| ||| |||| ||||| || || || |||||||| || |||||||||| |
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| T |
3784083 |
ccatctctacaatcagaaagagaaatagaaatcgaagacgacgaatcaagatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcat |
3783984 |
T |
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| Q |
112 |
aaacatcaagtttaggcgacccag |
135 |
Q |
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||||||||| |||||| || |||| |
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| T |
3783983 |
aaacatcaaatttaggtgagccag |
3783960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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