View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_low_15 (Length: 249)
Name: NF19383_low_15
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34305063 - 34304830
Alignment:
| Q |
1 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactggtaccaaaaccaaaggttcaccaataccatccatggattcccccgtccctctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34305063 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactggtaccaaaaccaaaggttcaccaataccatccatggattcccccatccctctc |
34304964 |
T |
|
| Q |
101 |
ttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgacactgtcaccggttaaagtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34304963 |
ttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgacactgtcaccggttaaagtag |
34304864 |
T |
|
| Q |
201 |
actggaaggaaactccagaaggacatgtcataac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34304863 |
actggaaggaaactccagaaggacatgtcataac |
34304830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 33426009 - 33426235
Alignment:
| Q |
1 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactggtaccaaaaccaaaggttcaccaataccatccatggattcccccgtccctctc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| || | ||||||| ||||||| | | |||| ||||||||||||||||| ||||||| |
|
|
| T |
33426009 |
acaactcaacatgttaccagtaccatttttcttgcttgtagttt-tcctaccaaagccaaaggattagcaatgccatccatggattccccaaaccctctc |
33426107 |
T |
|
| Q |
101 |
ttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgacactgtcaccggttaaagtag |
200 |
Q |
| |
|
||| | |||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
33426108 |
ttagctgatcatttcccagacccattttgtgtcatggaacaaacctactttggagttgagaaagaccaatcagccatgacattgtcaccggttaaagtag |
33426207 |
T |
|
| Q |
201 |
actggaaggaaactccagaaggacatgt |
228 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
33426208 |
actggaaggaaactccagaagaacatgt |
33426235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 34314171 - 34314360
Alignment:
| Q |
1 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactgg---------taccaaaaccaaaggttcaccaataccatccatggattccccc |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| | | ||| ||||||||||| ||| |
|
|
| T |
34314171 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactggtggttttcctaccaaagcaaaaggtttgctaccaccttccatggattctccc |
34314270 |
T |
|
| Q |
92 |
gtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgaca |
181 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||||||||| | |||||| | ||| ||||||||||| ||||||| |||| |||||| |
|
|
| T |
34314271 |
aatcctctcttagctgatcatttcccagaccgattttgcgtcacggaacaaatcccctatggagttgagatagaccaatcagccatgaca |
34314360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 34311839 - 34311965
Alignment:
| Q |
107 |
gatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaaccagcaatgacactgtcaccggttaaagtagactgga |
206 |
Q |
| |
|
|||| |||||| ||||||||| | ||| | |||||| | ||||||||||||| ||| || ||||| | ||| |||||||||| | || ||||||||||| |
|
|
| T |
34311839 |
gatcgtttccccgatccatttcgtgtcttagaacaaatcccctttggagttgaaaaaaacgaaccatccatgtcactgtcaccagctagagtagactgga |
34311938 |
T |
|
| Q |
207 |
aggaaactccagaaggacatgtcataa |
233 |
Q |
| |
|
||||||||||||| |||||||| |||| |
|
|
| T |
34311939 |
aggaaactccagagggacatgttataa |
34311965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 34317567 - 34317390
Alignment:
| Q |
1 |
acaactcaacatgttactagtaccatttttcttgcttgttcttactggta---------ccaaaaccaaaggttcaccaataccatccatggattccccc |
91 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| | |||||| || ||| ||||||||||| ||| |
|
|
| T |
34317567 |
acaactcaacatgttactagtactttttttcttgattgttcttgctggtagttttccaaccaaagcaaaaggtccagtgccaccttccatggattctccc |
34317468 |
T |
|
| Q |
92 |
gtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcctttggagttgagaaagaccaa |
169 |
Q |
| |
|
||||||||| | |||||||||||||| | || |||||||||| || ||| | ||||||||||||||||||||||| |
|
|
| T |
34317467 |
aatcctctcttagctgatcatttcccagaccaatattgcgtcatggaagaaatcccctttggagttgagaaagaccaa |
34317390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 34323063 - 34323006
Alignment:
| Q |
176 |
atgacactgtcaccggttaaagtagactggaaggaaactccagaaggacatgtcataa |
233 |
Q |
| |
|
|||||| ||||||| | || |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
34323063 |
atgacaatgtcaccagctagagtagactggaaggaaactccagatggacatgttataa |
34323006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34311712 - 34311754
Alignment:
| Q |
1 |
acaactcaacatgttactagtaccatttttcttgcttgttctt |
43 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
34311712 |
acaactcaacatgttactcgtaccatttctcttgcttattctt |
34311754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 181
Target Start/End: Complemental strand, 25651643 - 25651511
Alignment:
| Q |
49 |
taccaaaaccaaaggttcaccaataccatccatggattcccccgtccctctcttatccgatcatttcccagatccattttgcgtcatgaaacaaacctcc |
148 |
Q |
| |
|
||||| |||||||||||||| | |||| ||||||||||| ||| ||||||||| | |||||||||||| | |||||||| ||| | |||||||| || |
|
|
| T |
25651643 |
taccagaaccaaaggttcactattaccttccatggattctcccaatcctctcttagctgatcatttcccaaacccattttgggtcgcggaacaaaccccc |
25651544 |
T |
|
| Q |
149 |
tttggagttgagaaagaccaaccagcaatgaca |
181 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |
|
|
| T |
25651543 |
tttggaattgagaaagaccaatcagccatgaca |
25651511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University