View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_low_16 (Length: 249)
Name: NF19383_low_16
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 232
Target Start/End: Complemental strand, 42339532 - 42339312
Alignment:
| Q |
11 |
aattcttaggcacataaagttgatttactcttccaactaatttttctatactcttcatttaagtagaagaactatcaaattcaaaagcacttgatcctat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42339532 |
aattcttaggcacataaagttgatttactcttccaactaatttttctatactcttcatt-aagtagaagaactatcaaattcaaaagcacttgatcctat |
42339434 |
T |
|
| Q |
111 |
agctaccttataacttgaattttattctagagaataaaaagactatttatgcacatgcattaaaaatacaagggttgtttttggatgatcggttgaaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42339433 |
agctaccttataacttgaattttattctagagaataaaaagattctttattcacatgcattaaaagtacaagggttgtttttggatgatcggttgaaaaa |
42339334 |
T |
|
| Q |
211 |
ctgtaataaattaagttgtgag |
232 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
42339333 |
ctataataaattaagttgtgag |
42339312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University