View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19383_low_17 (Length: 244)

Name: NF19383_low_17
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19383_low_17
NF19383_low_17
[»] chr5 (1 HSPs)
chr5 (14-227)||(31610146-31610359)
[»] chr1 (3 HSPs)
chr1 (126-227)||(18438690-18438790)
chr1 (126-227)||(18449548-18449648)
chr1 (126-227)||(18454641-18454741)
[»] chr2 (4 HSPs)
chr2 (14-227)||(9447077-9447274)
chr2 (155-227)||(31320358-31320430)
chr2 (14-75)||(31320517-31320579)
chr2 (166-211)||(38346612-38346657)
[»] chr7 (1 HSPs)
chr7 (175-225)||(30559269-30559319)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 31610359 - 31610146
Alignment:
Q  14 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccactaagactagcaatacaacactagctatgacactaaacatgaaccgcta 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  31610359 gaacacacctgccaatggaggtacaaagaccacatctatcaatggctaccactaagactagctatacaacgctagctatgacactaaacatgaactgcta 31610260  T
Q  114 agcnnnnnnngcaaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagt 213  Q
    |||         ||||| || |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  31610259 agcaaaaaagcaaaccaatccagcagcagaactagtagtaaaaaagaatacaatcgatcacactaagatagattcagcaaccatctaaaatatcagaagt 31610160  T
Q  214 tgaacccaaataag 227  Q
    ||||||||||||||    
T  31610159 tgaacccaaataag 31610146  T

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Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 18438790 - 18438690
Alignment:
Q  126 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 225  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18438790 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18438692  T
Q  226 ag 227  Q
    ||    
T  18438691 ag 18438690  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 18449648 - 18449548
Alignment:
Q  126 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 225  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18449648 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18449550  T
Q  226 ag 227  Q
    ||    
T  18449549 ag 18449548  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 18454741 - 18454641
Alignment:
Q  126 aaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 225  Q
    ||||| || |||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18454741 aaccattccagcaacagatctagtagtaaaaa-gaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaata 18454643  T
Q  226 ag 227  Q
    ||    
T  18454642 ag 18454641  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 9447274 - 9447077
Alignment:
Q  14 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccactaagactagcaatacaacactagctatgacactaaacatgaaccgcta 113  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||             ||||||||| ||||| |||||||| ||||||| ||||    
T  9447274 gaacacacctgccaatggaggtacaaagaccaaatccatcaatggctacct------------atacaacacaagctaagacactaa-catgaactgcta 9447188  T
Q  114 agcnnnnnnngcaaccagtctagcagcagaactagtagtaaaaaagaatacaatctatcccac-taagatagattcagcaaccatctaaaataacagaag 212  Q
    |||         |||||||| ||||| ||||||||||||||||| || |||||| |||||| | ||||||||||||||| |||||| |||||||||||||    
T  9447187 agcaaagca---aaccagtccagcagtagaactagtagtaaaaa-gagtacaatatatcccccctaagatagattcagccaccatccaaaataacagaag 9447092  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 31320430 - 31320358
Alignment:
Q  155 aaaagaatacaatctatcccactaagatagattcagcaaccatctaaaataacagaagttgaacccaaataag 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  31320430 aaaagaatacaatctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataag 31320358  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 31320579 - 31320517
Alignment:
Q  14 gaacacacctgccaatggaggtacaaagaccacatccatcaatggctaccac-taagactagc 75  Q
    |||||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  31320579 gaacaccccttccaatggaggtacaaagaccacatccaacaatggctaccacgtaagactagc 31320517  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 38346612 - 38346657
Alignment:
Q  166 atctatcccactaagatagattcagcaaccatctaaaataacagaa 211  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346612 atctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 30559269 - 30559319
Alignment:
Q  175 actaagatagattcagcaaccatctaaaataacagaagttgaacccaaata 225  Q
    |||||||||||||||||||||| | |||||||||||||  ||| |||||||    
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaata 30559319  T

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