View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_low_19 (Length: 239)
Name: NF19383_low_19
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 2136605 - 2136376
Alignment:
| Q |
9 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2136605 |
gacatcatcataaatacacaataacacatctctataaatgttcaccatttcttctcactcaccccctcttctgtttaagaaacagccttgagagaaacag |
2136506 |
T |
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| Q |
109 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttcaccat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2136505 |
aatcaaatcctttccttaaccttcacgccttcatttaaaaaggttcaaccttttaaccaatctctgaactctttctttgacccttttttcacttca-cat |
2136407 |
T |
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| Q |
209 |
taaactccttcctaactctttaaattcccac |
239 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2136406 |
taaactccttcctaactctttaaattcccac |
2136376 |
T |
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