View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_low_21 (Length: 238)
Name: NF19383_low_21
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 47772792 - 47773000
Alignment:
| Q |
18 |
gctctatttccctttctttgttatcnnnnnnncatagctgcataccatgcaaaagctgatgattcttattcctgtgataacgacataggcaattacacgt |
117 |
Q |
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| T |
47772792 |
gctctatttccctttctttgttatctttttttcatagctgcataccatgcaaaagccgatgatgc--atta-tgtgataacaacataggcaactacacat |
47772888 |
T |
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| Q |
118 |
ccaatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttctcatatggtgaaga |
217 |
Q |
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||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47772889 |
ccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttctcatatggcgaaga |
47772988 |
T |
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| Q |
218 |
accaaacaaagc |
229 |
Q |
| |
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|||||||||||| |
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| T |
47772989 |
accaaacaaagc |
47773000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 47764471 - 47764619
Alignment:
| Q |
90 |
tgtgataacgacataggcaattacacgtccaatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacg |
189 |
Q |
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| T |
47764471 |
tgtgataacaacagaggcaattacacagccaatagcacctacgacaacaaccttaaaacccttttttccagtttttcttcccataaagaagtcaattatg |
47764570 |
T |
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| Q |
190 |
gtttctacaatttctcatatggtgaagaaccaaacaaagcgtacaccat |
238 |
Q |
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| T |
47764571 |
gtttctacaatttctcatatggccaagaccccgacaaagcatacaccat |
47764619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 47718295 - 47718189
Alignment:
| Q |
105 |
ggcaattacacgtccaatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
204 |
Q |
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| T |
47718295 |
ggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttct |
47718196 |
T |
|
| Q |
205 |
catatgg |
211 |
Q |
| |
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| ||||| |
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| T |
47718195 |
cttatgg |
47718189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 6523594 - 6523644
Alignment:
| Q |
178 |
aaatcaactacggtttctacaatttctcatatggtgaagaaccaaacaaag |
228 |
Q |
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| T |
6523594 |
aaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaag |
6523644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 47713501 - 47713395
Alignment:
| Q |
105 |
ggcaattacacgtccaatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
204 |
Q |
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| T |
47713501 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct |
47713402 |
T |
|
| Q |
205 |
catatgg |
211 |
Q |
| |
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| ||||| |
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| T |
47713401 |
cttatgg |
47713395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 47746084 - 47745978
Alignment:
| Q |
105 |
ggcaattacacgtccaatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
204 |
Q |
| |
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||||| ||||| ||||||| ||||| | |||||||| || |||||||| |||| ||| |||| | || ||||||||||||||||||||||||||| |
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| T |
47746084 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttct |
47745985 |
T |
|
| Q |
205 |
catatgg |
211 |
Q |
| |
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| ||||| |
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| T |
47745984 |
cttatgg |
47745978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 6500318 - 6500281
Alignment:
| Q |
174 |
acagaaatcaactacggtttctacaatttctcatatgg |
211 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||| |
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| T |
6500318 |
acagaaatcaactacggtttctacaatttttcacatgg |
6500281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 47673751 - 47673787
Alignment:
| Q |
184 |
actacggtttctacaatttctcatatggtgaagaacc |
220 |
Q |
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|||||||||||||||||||||| ||||| |||||||| |
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| T |
47673751 |
actacggtttctacaatttctcgtatggcgaagaacc |
47673787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 47685865 - 47685897
Alignment:
| Q |
184 |
actacggtttctacaatttctcatatggtgaag |
216 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
47685865 |
actatggtttctacaatttctcatatggtgaag |
47685897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 27371870 - 27371778
Alignment:
| Q |
119 |
caatagtacctacaacaacaaccttaaaacccttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttctcatatgg |
211 |
Q |
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| T |
27371870 |
caatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcatatgg |
27371778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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