View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19383_low_3 (Length: 483)
Name: NF19383_low_3
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 5 - 468
Target Start/End: Original strand, 4058557 - 4059023
Alignment:
| Q |
5 |
gtcaatttttattgtcatgttccctaaaagtgggttaataaattctaacacaatttactaatatgatatgcatgatggttcatgaaccttaattgtcgcc |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4058557 |
gtcaatttttattgccatgttccctaaaagtgggttaataaagtctaacacaatttactaatatgatatgcatgatggttcatgaacgttaattgtcgcc |
4058656 |
T |
|
| Q |
105 |
ttcatccttttgtggttataagtcactcattcatgtaactattatcattaacaggtgttgggtttattcacaatccataattttttgcacattacaacat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4058657 |
ttcatccttttgtggttataagtcactcattcatgtaactattatcattaacaggtgttgggtttattcacaatccaattttttttgcacattacaacac |
4058756 |
T |
|
| Q |
205 |
tttttcatagttcacgtatgcataacacatttcacaattttatcaccatcgcataacaaatttgcaaaaattcacattaagaatatttcaaatattcaat |
304 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058757 |
tttttcattgttcacgtattcataacgcatttcacaattttatcaccatcacataacaaatttgcaaaaattcacattaagaatatttcaaatattcaat |
4058856 |
T |
|
| Q |
305 |
taaaagtacatagcaatgattcatatatcatactatgtcaatcatttcacttaagaagcaaacaacaaatatttcacttaagcacaatatagtcaagtat |
404 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058857 |
taaaagtacatagaaatgattcatatatcatactatgtcaatcatttcacttaagaagcaaacaacaaatatttcacttaagcacaatatagtcaagtat |
4058956 |
T |
|
| Q |
405 |
gaaag---ttatatgatatatcaacatgaaattcaatcaatacataacacggcagttatgaccatat |
468 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4058957 |
gaaagttattatatgatatatcaacatgaaattcaatcaatacataacacggcagttatgaccatat |
4059023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University