View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19383_low_8 (Length: 377)
Name: NF19383_low_8
Description: NF19383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19383_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Complemental strand, 40806682 - 40806322
Alignment:
| Q |
7 |
agatttaggatgcagtcaaatgtagaccattatattaagaatgggaaaattatagaagaagaataaaattatcttttcgttattcacactcattttttct |
106 |
Q |
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| T |
40806682 |
agatttaggatgcagtcaaatgtagaccattatattaagaatgggaaaattatagaagaagaataaaattatcttttcattattcacactcatcttttct |
40806583 |
T |
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| Q |
107 |
taattatccgcagctaacatgcatttatatttatatccattccttcaaacaacaagtgagttagcacaatatgagtggttgaggcttggtagtcttggag |
206 |
Q |
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| T |
40806582 |
taattatccgcagctaacatgcatttatatttatatccattccttcaaacaacaagcgagttaacacaatatgagtggttgaggcttggtagtcttggag |
40806483 |
T |
|
| Q |
207 |
tcattggtgctttggtgaaggtattacatatttgttggatttattttgtatgcataatactatgtgtttaataagttttaatggttttaatggtgacatc |
306 |
Q |
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| T |
40806482 |
tcattggtgctttggtgaaggtattacatatttgttggatttattttgtatgcataatactatgtgtttaataagttttaatggttttaatggtgacatc |
40806383 |
T |
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| Q |
307 |
tataataaaaagagaatacagttactgaa---aatgtcacaaaaatctagcaatatgaaac |
364 |
Q |
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| T |
40806382 |
tataataaaaagagaatacagttactgaaaataatgtcacaaaaatctagcaatgtgaaac |
40806322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 232
Target Start/End: Complemental strand, 40817385 - 40817255
Alignment:
| Q |
102 |
tttcttaattatccgcagctaacatgcatttatatttatatccattccttcaaacaacaagtgagttagcacaatatgagtggttgaggcttggtagtct |
201 |
Q |
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| T |
40817385 |
tttcttaattatttgcagctaacatgcctttatatttttatccattccttcaaacgataagcgagttggcccaatttgaacatttcaggcttgttagtct |
40817286 |
T |
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| Q |
202 |
tggagtcattggtgctttggtgaaggtatta |
232 |
Q |
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| T |
40817285 |
tggagtcatcggtgtgttggtgaaggtatta |
40817255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 9518228 - 9518362
Alignment:
| Q |
101 |
ttttcttaattatccgcagctaacatgcatttatatttatatccattccttcaaacaacaagtgagttagcacaatatgagtggttgaggcttggtagtc |
200 |
Q |
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| T |
9518228 |
tttttttaattatttgcagctagcatgcctttatatttttatccattccttcaaacaacaagcgagttagcccaatttgagcatttaagacttgctagtc |
9518327 |
T |
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| Q |
201 |
ttggagtcattggtgctttggtgaaggtattacat |
235 |
Q |
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| T |
9518328 |
ttggagtcatcggtgcgttggtgaaggtattacat |
9518362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 5119502 - 5119387
Alignment:
| Q |
99 |
ttttttcttaattatccgcagctaacatgcatttatatttatatccattccttcaaacaacaagtgagttagcacaatatgagtggttgaggcttggtag |
198 |
Q |
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|||||||||| |||| |||||||| |||| |||||||||||||||||| ||| |||| ||||| |||||||||| | |||| |||||| ||| ||| |
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| T |
5119502 |
ttttttctta-ttatatgcagctaatatgcctttatatttatatccatttcttaaaacgacaagcaagttagcacattttgagaaattgagggttgctag |
5119404 |
T |
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| Q |
199 |
tcttggagtcattggtg |
215 |
Q |
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| T |
5119403 |
tcttggagtcattggtg |
5119387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 24128367 - 24128329
Alignment:
| Q |
197 |
agtcttggagtcattggtgctttggtgaaggtattacat |
235 |
Q |
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| T |
24128367 |
agtcttggagtcattggtgctttagtgaaggtattacat |
24128329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 45160054 - 45160099
Alignment:
| Q |
188 |
aggcttggtagtcttggagtcattggtgctttggtgaaggtattac |
233 |
Q |
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| T |
45160054 |
aggcttgcaagtctcggagtcattggtgccttggtgaaggtattac |
45160099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 16340900 - 16340977
Alignment:
| Q |
154 |
aacaacaagtgagttagcacaatatgagtggttgaggcttggtagtcttggagtcattggtgctttggtgaaggtatt |
231 |
Q |
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| T |
16340900 |
aacaacaagcaagttaacacaatttgagtatttgaggcttactagtcttgtagtcatagatgccttggtgaaggtatt |
16340977 |
T |
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