View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19384_low_1 (Length: 357)
Name: NF19384_low_1
Description: NF19384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19384_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 28258496 - 28258836
Alignment:
| Q |
9 |
gacaatccaattttctgataagacacctttagtggtttgtgattcagagaacttgtattgaggaaacacatgaaaaataatatgatcacatcaacacctt |
108 |
Q |
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| T |
28258496 |
gacaatccaattttctgaaaagaca----tagtggtttgtgattcggagcacttgtattaaggaaacacatgaaaaatgatatgataacatcaacacctt |
28258591 |
T |
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| Q |
109 |
gaaatcgctaatgcccacaagtttccaggaaaaattacaagacaaatagtatatggcaagcaataattcgattatttgtccaaagtttgatcaattgttt |
208 |
Q |
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| T |
28258592 |
gaaatcgctcatgcccacaagtttccaggaaaaattacaagacaaatagtatatggcaagcaataattcgattatttgtccaaagtttgatcaattgttt |
28258691 |
T |
|
| Q |
209 |
tcatcttttgccgattgatcaattttaattcttgtcattgttgttgcatagaattgtttcttcaacatctagctggtggtttgtatatggtgttatattc |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28258692 |
tcatcttttgccgattgatcaattttcattcttgtcattgttgttgcagagaattgtttcttcaacatctagctggtggtttgtatatggtgttatattc |
28258791 |
T |
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| Q |
309 |
tacataattaatcaatatgaagtgcatagtttttatcttcaagaata |
355 |
Q |
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|||||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
28258792 |
tacataattaatca--atggaatgcatagtttttatcttcaagaata |
28258836 |
T |
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