View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19384_low_2 (Length: 261)
Name: NF19384_low_2
Description: NF19384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19384_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 47478346 - 47478123
Alignment:
| Q |
20 |
tcggttaatatgggacagaccgaagaaatatttattaatcatgagtgcaaaaaataattcaaaattttgaatgatggattatatgataaaaacccaccca |
119 |
Q |
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| T |
47478346 |
tcggttaacatgagacagacggaagaaatatttattaatcatgagggcaaaaaataattcaaaattttgaatgatggattatatgataaaaacccaccca |
47478247 |
T |
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| Q |
120 |
aagttgtgtttttccaagtcaatcatagttgaccagtatggaagagaaaaacaaacatattcaatgatggaacataacacatagaatggtacgacatcac |
219 |
Q |
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| T |
47478246 |
aagttgtgtttttccaagtcaatcatagttgaccagtatggaagagaaaaagaaacatattcaatgatggaacataacacatagaatggtacgacatcac |
47478147 |
T |
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| Q |
220 |
aaagcgaggaaagcgtgtgccacg |
243 |
Q |
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| T |
47478146 |
aaagcgaggaaagcgtgtgccacg |
47478123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 31088397 - 31088442
Alignment:
| Q |
52 |
tattaatcatgagtgcaaaaaataattcaaaattttgaatgatgga |
97 |
Q |
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| T |
31088397 |
tattaaacatgagtgcaaaaaataattcaaaatttcgaaggatgga |
31088442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 94
Target Start/End: Original strand, 3485506 - 3485535
Alignment:
| Q |
65 |
tgcaaaaaataattcaaaattttgaatgat |
94 |
Q |
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| T |
3485506 |
tgcaaaaaataattcaaaattttgaatgat |
3485535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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