View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_high_2 (Length: 615)
Name: NF19385_high_2
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 603
Target Start/End: Complemental strand, 56099313 - 56098690
Alignment:
| Q |
1 |
tttatattgatggtgatgatgatgaccattggcttcagcatttgcaagtgcctgagaatgagatgagcctccagcagcatt---------tggtacatta |
91 |
Q |
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| T |
56099313 |
tttatattgatggtgatgatgatgaccattggcttcagcatttgcaagtgcctgagaatgagatgagcctccagcagcattagcagcatttggtgcatta |
56099214 |
T |
|
| Q |
92 |
ttattattatta------------ccatccctcatcatataagttggtgcagcattaccataataccctccatttggatgaccgatatgaaactgtggga |
179 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56099213 |
ttattattattattattattattaccatccctcatcatataagttggtgcagcattaccataataccctccatttggatgaccgatatgaaactgtggga |
56099114 |
T |
|
| Q |
180 |
caaacccccctaaatttccatattccatacccctctttcccaaaggttcaactctcattgaggtacgatcaccttcaagctcacgataacgatgaaggta |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56099113 |
caaacccccctaaatttccatattccatacccctctttcccaaaggttcaactctcattgaggtacgatcaccttcaagctcacgataacgatgaaggta |
56099014 |
T |
|
| Q |
280 |
cattgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcctttgctctctctgacaacgt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56099013 |
cattgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcctttgctctctctgacaacgt |
56098914 |
T |
|
| Q |
380 |
tcattggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttttgcatgtggtggtagaattt |
479 |
Q |
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| T |
56098913 |
tcattggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttttgcatgtggtggtagaatct |
56098814 |
T |
|
| Q |
480 |
tgcgcatgatccttatcacatttgcaattggcataaaacggtcttgttccctcacaatgcattcattgtcttgttctgttccattgttgttctgttctcc |
579 |
Q |
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| T |
56098813 |
tgcgcatgatccttatcacatttgcaattggcataaaacggtcttgttccctcacaatgcattcattgtcttgttctgtaccattgttgttctgttctcc |
56098714 |
T |
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| Q |
580 |
tacttgctgcctcgtgttcatctc |
603 |
Q |
| |
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| T |
56098713 |
tacttgctgcctcgtgttcatctc |
56098690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 465
Target Start/End: Original strand, 14394082 - 14394287
Alignment:
| Q |
260 |
tcacgataacgatgaaggtacattgttagaggttcaatgtaatcatcaaaaccaagcttactcatagcccaaagcacatcttctgcagttattgtcttcc |
359 |
Q |
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||||| ||||| |||||||| | ||||| ||| | || ||||||||||||||||| || | ||| ||||| || | ||||||||| || | ||| || | |
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| T |
14394082 |
tcacggtaacgttgaaggtaaaatgttaaaggatgaacataatcatcaaaaccaagtttccccattgcccatagtatatcttctgctgtaactgtttttc |
14394181 |
T |
|
| Q |
360 |
tttgctctctctgacaacgttcattggcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgcatcatcagatatttt |
459 |
Q |
| |
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|||| ||||| || || || || || ||||| ||||||||||| ||||| || || ||||| ||||| || ||||||||||| || || || ||||| |
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| T |
14394182 |
tttgttctctttggcatcgatcgtttgcttcggatgttatgaagcttatgtattcggatacacattcttgaatggtttcttttgcgtcgtcggagatttt |
14394281 |
T |
|
| Q |
460 |
tgcatg |
465 |
Q |
| |
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|||||| |
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|
| T |
14394282 |
tgcatg |
14394287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 9722763 - 9722705
Alignment:
| Q |
386 |
gcttctccagttatgaagctgatgtactcagacacacactcttggattgtttcttttgc |
444 |
Q |
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| T |
9722763 |
gcttctccagttatgaaactgataaactctgatacacactcttgtactgtttcttttgc |
9722705 |
T |
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