View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_low_12 (Length: 276)
Name: NF19385_low_12
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 12190582 - 12190762
Alignment:
| Q |
7 |
atataggttcataattaccacacaatagaacatacgatactcaaattgtaatcaagtatagaaaccaatcgaaaaagaaaagcatgatcaaatcaaacac |
106 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
12190582 |
atataggttcacaattaccacacaatagaacatacgatactcaaattgtaatcaagtatagaaaccaatcg-aaaacaaaagcatgatcaaatcaaacac |
12190680 |
T |
|
| Q |
107 |
cattgtagagatgaacaggataacaaggaacatgtt-aaactcttgttcaacaataacaacactcactcataagacttccta |
187 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12190681 |
cattgtagagatgaacaggataacaaggaacatgttaaaactcttgttcaacaataacaacactcactcataagacttccta |
12190762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 39367358 - 39367135
Alignment:
| Q |
7 |
atataggttcataattaccacacaatagaacatacga--tactcaaattgtaatcaagtatagaaaccaatcgaaaaagaaaagcatgatcaaatcaaac |
104 |
Q |
| |
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|||||| |||| ||||||||||||| | ||||||| | ||||||||| || | ||| |||||||||||||| |||| |||||||||||||||||||||| |
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| T |
39367358 |
atatagattcacaattaccacacaacataacatacaagctactcaaatagtgaacaaatatagaaaccaatcaaaaaggaaaagcatgatcaaatcaaac |
39367259 |
T |
|
| Q |
105 |
accattgtagagatgaacaggataaca--aggaacatgttaaactcttgttcaacaataacaacactcactcataagacttcctacacattaataactca |
202 |
Q |
| |
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||| |||||||||||||||||| |||| || | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39367258 |
acctttgtagagatgaacaggacaacacaagaatcatgttaaacattttttcaacaataacaacactcactcataagacttcctacacattaataactca |
39367159 |
T |
|
| Q |
203 |
aaagacaaactcattgtgagccac |
226 |
Q |
| |
|
||| |||||||||||| ||||||| |
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| T |
39367158 |
aaaaacaaactcattgcgagccac |
39367135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 27150474 - 27150272
Alignment:
| Q |
7 |
atataggttcataattaccacacaatagaacatacga--tactcaaattgtaatcaagtatagaaaccaatcgaaaaagaaaagcatgatcaaatcaaac |
104 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||| | ||||||||| || ||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
27150474 |
atatagattcacaattaccacacaacagaacatacaagctactcaaatagtgatcaaatatagaaaccaatcgaaaaggaaaagcatgataaaatcaaac |
27150375 |
T |
|
| Q |
105 |
accattgtagagatgaacag-gataaca--aggaacatgttaaactcttgttcaacaataacaacactcactcataagacttcctacacattaataactc |
201 |
Q |
| |
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||| |||||||||||||| || |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27150374 |
acctctgtagagatgaacaaagacaacacaaggatcatgttaaactcttgttcaacaataacaacactcactcataagacttcctacacattaataactc |
27150275 |
T |
|
| Q |
202 |
aaa |
204 |
Q |
| |
|
||| |
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|
| T |
27150274 |
aaa |
27150272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 7703316 - 7703475
Alignment:
| Q |
7 |
atataggttcataattaccacacaatagaacatacga--tactcaaattgtaatcaagtatagaaaccaatcgaaaaagaaaagcatgatcaaatcaaac |
104 |
Q |
| |
|
|||||| |||| ||||||||| ||| ||||||||| | ||||||||| || || || ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7703316 |
atatagattcacaattaccacgcaacagaacatacaagctactcaaatagtgataaaatatagaaaccaatcgaaaaggaaaagcatgatcaaatcaaac |
7703415 |
T |
|
| Q |
105 |
accattgtagagatgaacaggata--acaaggaacatgttaaactcttgttcaacaataa |
162 |
Q |
| |
|
||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||| |
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|
| T |
7703416 |
acctttgtagagatgaacaggacaacacaaggatcatgttaaactcttgttcaacaataa |
7703475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 24558209 - 24558121
Alignment:
| Q |
110 |
tgtagagatgaacaggataacaaggaacatgttaaactcttgttcaacaataacaacactcactcataagacttcctacacattaataa |
198 |
Q |
| |
|
|||||||||||||| || |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24558209 |
tgtagagatgaacaagacaacaaggatcgtgttaagctcttgttcaacaataacaacactcactcataagacttcctacacattaataa |
24558121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 180
Target Start/End: Complemental strand, 37744280 - 37744148
Alignment:
| Q |
48 |
caaattgtaatcaagtatagaaaccaatcgaaaaagaaaagcatgatcaaatcaaacaccattgtagagatgaacaggataacaaggaacatgttaaact |
147 |
Q |
| |
|
|||||| | ||||| ||||||||||| |||| ||||||||||||||||||||||| | ||| ||| ||||||| | |||||||| | ||||||||| |
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|
| T |
37744280 |
caaattatgatcaaatatagaaaccagctaaaaaggaaaagcatgatcaaatcaaacatctctgttgagctgaacagaacaacaaggatcgtgttaaact |
37744181 |
T |
|
| Q |
148 |
cttgttcaacaataacaacactcactcataaga |
180 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| |
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|
| T |
37744180 |
cttgttcaaacagaacaacactcactcgtaaga |
37744148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 24558121 - 24558071
Alignment:
| Q |
177 |
aagacttcctacacattaataactca-aaagacaaactcattgtgagccac |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24558121 |
aagacttcctacacattaataactcagaaagacaaactcattgagagccac |
24558071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 31571698 - 31571789
Alignment:
| Q |
89 |
catgatcaaatcaaacaccattgtagagatgaacaggataacaaggaacatgttaaactcttgttcaacaataacaacactcactcataaga |
180 |
Q |
| |
|
||||||||||||||||| | |||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31571698 |
catgatcaaatcaaacatctttgttgagctgaacagaataacaaggatcatgttaaactcttgttcaacaataacaacactcactcataaga |
31571789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 6224248 - 6224376
Alignment:
| Q |
68 |
aaaccaatcgaaaaagaaaagcatgatcaaatcaaacaccattgtagagatgaacaggataacaaggaacatgttaaactcttgttcaacaataacaaca |
167 |
Q |
| |
|
|||||| | ||||| ||||| ||||||||||||||||||| ||| ||| ||||||| | ||||| || | ||||||||||||||||||||| ||||||| |
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|
| T |
6224248 |
aaaccagttgaaaaggaaaaacatgatcaaatcaaacacctctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaaca |
6224347 |
T |
|
| Q |
168 |
ctcactc-ataagacttcctacacattaa |
195 |
Q |
| |
|
||||||| |||||| || ||||| ||||| |
|
|
| T |
6224348 |
ctcactcaataagagtttctacaaattaa |
6224376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 24631438 - 24631335
Alignment:
| Q |
91 |
tgatcaaatcaaacaccattgtagagatgaacaggataacaaggaacatgttaaactcttgttcaacaataacaacactcactcataagacttcctacac |
190 |
Q |
| |
|
||||||||||||||||| | || ||| | ||||| | |||||||| ||| ||||||||||||||||||| |||||| ||||||||||||| || ||||| |
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|
| T |
24631438 |
tgatcaaatcaaacaccct-gttgagcttaacagaacaacaaggatcatattaaactcttgttcaacaagaacaactctcactcataagattttctacaa |
24631340 |
T |
|
| Q |
191 |
attaa |
195 |
Q |
| |
|
||||| |
|
|
| T |
24631339 |
attaa |
24631335 |
T |
|
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