View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_low_3 (Length: 541)
Name: NF19385_low_3
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 115 - 523
Target Start/End: Complemental strand, 29092806 - 29092404
Alignment:
| Q |
115 |
caagtcattggttcttgatctgctctcatgatcagtgcttctcattaccatgttatttctctctaactttacaagaaaaatttgtgattctttgctggca |
214 |
Q |
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| T |
29092806 |
caagtcattggttcttgatctgctctcatgatcagtgcttctcattaccatgttatttctctctaactttacaagaaaaatttgtgattctttgctggca |
29092707 |
T |
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| Q |
215 |
ttacttcattttagtgcccatgtctttggtactaacatagagattgtggcaactaagagaaaaattgtcacttgaagttgaaagggcaagataaaacttg |
314 |
Q |
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| T |
29092706 |
ttacttcatatcagtgcccatgtctttggtactaacatagagattgtggcaactaagagaaaaattgtcact------tgaaagggcaagataatacttg |
29092613 |
T |
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| Q |
315 |
aagaagaactgtcttgctgaaccttctcataagggaatccaattgatannnnnnnnnnnnnnnnnnnaggaaatgcatcatttggtttgttaatcctgtt |
414 |
Q |
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| T |
29092612 |
aagaagaactgtcttgctgaaccttctcataagggaatccaattgatagtggtggtggtggtggtggaggaaatgcatcatttggtttgttaatcctgtt |
29092513 |
T |
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| Q |
415 |
gtaaaatgttcggttgagagttagnnnnnnnntaagtatgcacaaatgttcattattatcgtatatgaatatgcgtgtcggaagagtgtccacgatgtat |
514 |
Q |
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| T |
29092512 |
gtaaaatgttcggttgagagttagaaaaaaaataagtatacacaaatgttcattattatcgtatatgaatatgcgtgtcggaagagtgtccacgatgtat |
29092413 |
T |
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| Q |
515 |
tgaagtaaa |
523 |
Q |
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| T |
29092412 |
tgaagtaaa |
29092404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 29092871 - 29092803
Alignment:
| Q |
13 |
gattatactgcaaataacttactattttgttaatttattccaaagnnnnnnnattggagtatttacaag |
81 |
Q |
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| T |
29092871 |
gattacactgcaaataactttctattttgttaatttattccaaagtttttttattggagtatttacaag |
29092803 |
T |
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