View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_low_4 (Length: 347)
Name: NF19385_low_4
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 38326633 - 38326315
Alignment:
| Q |
18 |
accattggctctgtggatcatcaagacaaagagaatcatcatttatgcagatacattttgaagtcacaacaacagatgagttataatccttatgcaagca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38326633 |
accattggctctgtggatcatcaagacaaagagaatcatcatttatgcagatacattttgaagtcacaacaaaagatgagttataatccttatgcaagca |
38326534 |
T |
|
| Q |
118 |
aagatgtttcccattttgatccacagtagccaaatgaagtctcgaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcagaaatagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38326533 |
aagatgtttcccattttgatccacagtagccaaatgaagtctagaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcagaaatagct |
38326434 |
T |
|
| Q |
218 |
actggaagcccttcaccaatagcagttaagcacttcttggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38326433 |
actggaagcccttcaccaatagcagttaagcacttcttggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagctac |
38326334 |
T |
|
| Q |
318 |
agatttcaagttcattctt |
336 |
Q |
| |
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|||||||||||||||||| |
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| T |
38326333 |
cgatttcaagttcattctt |
38326315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 10766489 - 10766177
Alignment:
| Q |
18 |
accattggctctgtggatcatcaagacaaagagaatcatcatttatgcagatacattttgaagtcacaacaacagatgagttataatccttatgcaagca |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||| |
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| T |
10766489 |
accattggctctgaggatcatcaagacaaagagaatcatcatgtatgcagatacattttgaagtcacaacagcagatgaattagtatccttttgcaagca |
10766390 |
T |
|
| Q |
118 |
aa---gatgtttcccattttgatccacagtagccaaatgaagtctcgaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcagaaata |
214 |
Q |
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|| | ||||| |||| ||||| |||||||||||||||||| | ||| ||||| ||| |||||||||||| |||||| ||||| |||||||||||| |
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| T |
10766389 |
aagttgttgtttgccatcttgattaacagtagccaaatgaagtttagaaggtgatgcagttttccatgaactattcttgctttcgcaatcatcagaaacg |
10766290 |
T |
|
| Q |
215 |
gctactggaagcccttcaccaatagcagttaagcacttcttggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgattctcgcagc |
314 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||| | || ||||||| |||||||||||| |||||| |||| || |||||||||| |||| |
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| T |
10766289 |
gaaactggaagcccttcaccggaagcagttaagcacttttgactctctttcaaaaagatttgagaacccttataagtccacctcttttgattctcacagc |
10766190 |
T |
|
| Q |
315 |
tacagatttcaag |
327 |
Q |
| |
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||| |||||||| |
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| T |
10766189 |
taccaatttcaag |
10766177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 2105635 - 2105335
Alignment:
| Q |
18 |
accattggctctgtggatcatcaagacaaagagaatcatc----atttatgcagatacattttgaagtcacaacaacagatgagttataatccttatgca |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||||||| ||| |||||| |||||||||| |||||||||||| |
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| T |
2105635 |
accattggctctatggatcatcaagaca--gagaatcatccatcattaatgcagatacattttgtagttacaacagcagatgagttggaatccttatgca |
2105538 |
T |
|
| Q |
114 |
agcaaa-gatgtttcccattttgatccacagtagccaaatgaagtctc---gaaagtgattcagatttccatgaactgttcttgttttcgtaatcatcag |
209 |
Q |
| |
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|| ||| | |||||||| ||||||| || ||||||||||||||| | ||||||||| ||||||||||| || ||||||| || ||||||||| |
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| T |
2105537 |
agtaaaagttgtttcccgttttgattcatagtagccaaatgaagaagcatagaaagtgatacagatttccattaattgttcttattaagacaatcatcag |
2105438 |
T |
|
| Q |
210 |
aaatagc-tactggaagcccttcaccaatagcagttaagcacttct---tggaatcattcaaaaggatttgagaaccattataaatccatcttgtttgat |
305 |
Q |
| |
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||| | | | || ||||| ||||||| |||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2105437 |
aaacaacatcttgaaagccattcaccagtagcagttaagcacttctatgtagtgtca-tcaaaaggatttgagaaccatcataaatccatctcttttgat |
2105339 |
T |
|
| Q |
306 |
tctc |
309 |
Q |
| |
|
|||| |
|
|
| T |
2105338 |
tctc |
2105335 |
T |
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