View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_low_5 (Length: 342)
Name: NF19385_low_5
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 34671544 - 34671808
Alignment:
| Q |
16 |
atccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcac |
115 |
Q |
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| T |
34671544 |
atccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcac |
34671643 |
T |
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| Q |
116 |
caaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccact |
215 |
Q |
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| T |
34671644 |
caaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccact |
34671743 |
T |
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| Q |
216 |
ccaggtggtgcggagaagcaagtccggcaattggtacatggctgcttgcgtgccacgggaggttt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34671744 |
ccaggtggtgcggagaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggttt |
34671808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 26965342 - 26965606
Alignment:
| Q |
16 |
atccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965342 |
atccaaagcaatttttcacctcgttaacttcttcttcttgtttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcac |
26965441 |
T |
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| Q |
116 |
caaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965442 |
caaatcactcggtcctttcacaagcgccttacagtggaaacactggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccact |
26965541 |
T |
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| Q |
216 |
ccaggtggtgcggagaagcaagtccggcaattggtacatggctgcttgcgtgccacgggaggttt |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26965542 |
ccaggtggtgcggagaagcaagtccggcaattggtacatcgctgcttgcgtgccacgggaggttt |
26965606 |
T |
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