View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19385_low_7 (Length: 318)
Name: NF19385_low_7
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 36920394 - 36920558
Alignment:
| Q |
15 |
tattgccgagttcgttgcttattctcagtttcttaattacgcatctagatcaatcgcaggtatatactactttctttataacttatatgaatttaataat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36920394 |
tattgccgagttcgttgcttattctcagtttctcaattacgcatctagatcaatcgcaggtatatactactttgtttataacttatatgaatttaataat |
36920493 |
T |
|
| Q |
115 |
tttggtttttctgatatttacattcagcttaacttttgggacgctactgcataagaaatttctaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36920494 |
tttggtttttctgatatttacattcagcttaacttttgggacgctactgcataagaaatttctaa |
36920558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 244 - 318
Target Start/End: Original strand, 36920626 - 36920700
Alignment:
| Q |
244 |
agtagtattaaaaatgaatcctaattggcaaggacattgatgtacggataactaaataaggaatgaaaagaaaca |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36920626 |
agtagtattaaaaatgaatcctaattggcaaggacattgatgtacggataactaaataaggaatgaaaagaaaca |
36920700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 36920577 - 36920618
Alignment:
| Q |
172 |
atttctaagttttagatgcattattttctacaacataattaa |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36920577 |
atttctaatttttagatgcattattttctacaacataattaa |
36920618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University