View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19385_low_8 (Length: 311)

Name: NF19385_low_8
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19385_low_8
NF19385_low_8
[»] chr4 (6 HSPs)
chr4 (39-296)||(22346839-22347101)
chr4 (1-39)||(15017545-15017583)
chr4 (1-38)||(17266600-17266637)
chr4 (1-38)||(39488053-39488090)
chr4 (1-40)||(20264939-20264978)
chr4 (1-38)||(15019186-15019223)
[»] chr6 (3 HSPs)
chr6 (1-39)||(30518188-30518226)
chr6 (43-143)||(14089718-14089818)
chr6 (1-38)||(20417455-20417492)
[»] chr2 (3 HSPs)
chr2 (1-38)||(6050127-6050164)
chr2 (43-143)||(33696877-33696977)
chr2 (5-41)||(15410013-15410049)
[»] chr5 (2 HSPs)
chr5 (43-143)||(9359459-9359559)
chr5 (1-38)||(244345-244382)
[»] chr1 (3 HSPs)
chr1 (43-143)||(46456668-46456768)
chr1 (1-38)||(20127281-20127318)
chr1 (2-38)||(6473986-6474022)
[»] scaffold0096 (1 HSPs)
scaffold0096 (5-38)||(22519-22552)
[»] chr7 (4 HSPs)
chr7 (1-38)||(9595340-9595377)
chr7 (1-38)||(9646303-9646340)
chr7 (43-143)||(9951963-9952063)
chr7 (5-38)||(32706555-32706588)
[»] chr8 (2 HSPs)
chr8 (43-143)||(24878448-24878548)
chr8 (5-38)||(20731089-20731122)
[»] scaffold0010 (1 HSPs)
scaffold0010 (5-38)||(136971-137004)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 39 - 296
Target Start/End: Original strand, 22346839 - 22347101
Alignment:
Q  39 aattggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactatttta 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  22346839 aattggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatgcgtcaaaggtttgtctgacccaaacttccgaactatttta 22346938  T
Q  139 taattcttttttgggattgtagcatctaaaaattcatgttgatgttgttgtaatgtatgtgtattttccatgttgaacatcctcatgatcaacctcattc 238  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22346939 taattcttttttggg-ttgtggcatctaaaaattcatgttgatgttgttgtaatgtatgtgcattttccatgttgaacatcctcatgatcaacctcattc 22347037  T
Q  239 tcgtcatcatgttgagtgatgctcc------acaagactagaatttggttggtctttagattct 296  Q
    |||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||    
T  22347038 tcgtcatcatgttgagtgatgctccacctaaacaagactagaatctggttggtctttagattct 22347101  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15017583 - 15017545
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatcaa 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  15017583 ttcataatttgcttccgacggctccgtggcactcatcaa 15017545  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17266637 - 17266600
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17266637 ttcataatttgcttccgacggctccgtggcactcatca 17266600  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39488090 - 39488053
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39488090 ttcataatttgcttccgacggctccgtggcactcatca 39488053  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20264978 - 20264939
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatcaaa 40  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  20264978 ttcataatttgcttccgacggctccgtgacactcatcaaa 20264939  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15019223 - 15019186
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  15019223 ttcataatttgcttccgacggctccgtagcactcatca 15019186  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30518226 - 30518188
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatcaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30518226 ttcataatttgcttccgacggcttcgtggcactcatcaa 30518188  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 14089718 - 14089818
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | ||||||||||||||| |||||||||||| |||||||||    
T  14089718 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtctgaccccaacttctgaactgttttataat 14089817  T
Q  143 t 143  Q
    |    
T  14089818 t 14089818  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20417492 - 20417455
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20417492 ttcataatttgcttccgacggctccgtggcactcatca 20417455  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6050164 - 6050127
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6050164 ttcataatttgcttccgacggcttcgtggcactcatca 6050127  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 33696977 - 33696877
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | ||||||||||||||| |||||||||||| |||||||||    
T  33696977 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtctgaccccaacttctgaactgttttataat 33696878  T
Q  143 t 143  Q
    |    
T  33696877 t 33696877  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 15410013 - 15410049
Alignment:
Q  5 taatttgcttccgacggcttcgtggcactcatcaaat 41  Q
    ||||||||||||||||||||||||||||||| |||||    
T  15410013 taatttgcttccgacggcttcgtggcactcaccaaat 15410049  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 9359459 - 9359559
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | ||||||||||||||| |||||||||||| |||||||||    
T  9359459 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtctgaccccaacttctgaactgttttataat 9359558  T
Q  143 t 143  Q
    |    
T  9359559 t 9359559  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 244382 - 244345
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  244382 ttcataatttgcttccgacggctccgtggcactcatca 244345  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 46456768 - 46456668
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | ||||||||||||||| |||||||||||| |||||||||    
T  46456768 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtctgaccccaacttctgaactgttttataat 46456669  T
Q  143 t 143  Q
    |    
T  46456668 t 46456668  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20127281 - 20127318
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  20127281 ttcataatttgcttccgacggctccgtggcactcatca 20127318  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 6473986 - 6474022
Alignment:
Q  2 tcataatttgcttccgacggcttcgtggcactcatca 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  6473986 tcataatttgcttccgacggctccgtggcactcatca 6474022  T

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Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 22552 - 22519
Alignment:
Q  5 taatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||||||||||||||    
T  22552 taatttgcttccgacggcttcgtggcactcatca 22519  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9595377 - 9595340
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9595377 ttcataatttgcttccgacggctccgtggcactcatca 9595340  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9646340 - 9646303
Alignment:
Q  1 ttcataatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9646340 ttcataatttgcttccgacggctccgtggcactcatca 9646303  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 9952063 - 9951963
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | ||||||||||||||| ||||| |||||| |||||||||    
T  9952063 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtctgaccccaacttttgaactgttttataat 9951964  T
Q  143 t 143  Q
    |    
T  9951963 t 9951963  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 32706555 - 32706588
Alignment:
Q  5 taatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  32706555 taatttgcttccgacggctccgtggcactcatca 32706588  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 24878448 - 24878548
Alignment:
Q  43 ggctcatcatcttctattgagaatgcatattcaactaaatttacaaacccataatacgtcaaaggtttgtctgacccaaacttctgaactattttataat 142  Q
    |||||||||||||| |  |||| ||||||||| || || |||||   |||||||| | | | |||||||| |||||| |||||||||||| |||||||||    
T  24878448 ggctcatcatcttcaaccgagagtgcatattccaccaagtttacctgcccataatgccttagaggtttgtttgaccccaacttctgaacttttttataat 24878547  T
Q  143 t 143  Q
    |    
T  24878548 t 24878548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 20731089 - 20731122
Alignment:
Q  5 taatttgcttccgacggcttcgtggcactcatca 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  20731089 taatttgcttccgacggctccgtggcactcatca 20731122  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 136971 - 137004
Alignment:
Q  5 taatttgcttccgacggcttcgtggcactcatca 38  Q
    |||||| |||||||||||||||||||||||||||    
T  136971 taatttccttccgacggcttcgtggcactcatca 137004  T

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