View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19385_low_9 (Length: 303)
Name: NF19385_low_9
Description: NF19385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19385_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 36352757 - 36353043
Alignment:
| Q |
1 |
acttcaataaataatgtcactttgattttgtcaaagccaacttaataccaaatatttctttggtcaatcgcacggtggcatcactagttttcaaacttgg |
100 |
Q |
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| T |
36352757 |
acttcaataaataatgtcactttgattttgtcaaagccaacttaataccaaatatttctttggtcaatcgcacggtgccatcactagttttcaaactcgg |
36352856 |
T |
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| Q |
101 |
gctatcacgaatttagtgtacatgtgattttatgctaacctttacattaaacttgttttcaaatagaaatatacggatataaattacttcactttaaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36352857 |
gctatcacgaatttagtgtacatgtgattttatgctaacctttacattaaacttgttttcaaatagaaatatatggatataaattacttcactttaaact |
36352956 |
T |
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| Q |
201 |
caaattttacaaaatcaaatttcttcaaatatatatttactaaacactaaacacacactacttacaacatgagttggcacaacattat |
288 |
Q |
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| T |
36352957 |
c-aattttacgaaatcaaatttcttcaaatatatatttactaaacaccaaacacacactacttacaacatgagttggcacaacattat |
36353043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 48360951 - 48360910
Alignment:
| Q |
179 |
ataaattacttcactttaaactcaaattttacaaaatcaaatt |
221 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
48360951 |
ataaattacttcacttcaaactc-aattttacaaaatcaaatt |
48360910 |
T |
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