View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19386_high_2 (Length: 348)
Name: NF19386_high_2
Description: NF19386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19386_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 14348071 - 14348392
Alignment:
| Q |
12 |
acagacactaaacacaccacactgacgcgtagacacccgcaataatttagaaaaatataaacaattaaatgtaaccacatgtctcaatatcgtgtcagtg |
111 |
Q |
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| T |
14348071 |
acagacactaaacacaccacactgacgcgtagacaccggcaataatttagaaaaatataaacaattaaatgtaagcacatgtctcaatatcgtgtcagtg |
14348170 |
T |
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| Q |
112 |
tcccgcatcagacaccagacaaaccttcaatttaaaacacctgtcctacaaacaaccc---acgtttccaaaaccaatccattatgattacctgaacaag |
208 |
Q |
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| T |
14348171 |
tcctgcatcagacaccagacaaaccttcaatttaaaacacccgtcctacacacaaccctaaacgtttccaaaaccaatccattatgattacctgaacaag |
14348270 |
T |
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| Q |
209 |
tggaagcaagtaagcaagagtctttccagacccagtatgagaccctaacacaacactcttcccatccaaaacagccggaacaccaatacactgaatctca |
308 |
Q |
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| T |
14348271 |
tggaagcaagtaagcaagagtctttccagacccagtatgagaccctaacacaacactcttcccatccaaaacagccggaacaccaatacactgaatctca |
14348370 |
T |
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| Q |
309 |
gtaggaacttcaatatccattt |
330 |
Q |
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| T |
14348371 |
gtaggaacttcaatacccattt |
14348392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 14347888 - 14347925
Alignment:
| Q |
95 |
tcaatatcgtgtcagtgtcccgcatcagacaccagaca |
132 |
Q |
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| T |
14347888 |
tcaatatcgtgtcagtgtcctacatcagacaccagaca |
14347925 |
T |
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