View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19386_low_5 (Length: 237)
Name: NF19386_low_5
Description: NF19386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19386_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 29146157 - 29146345
Alignment:
| Q |
3 |
atttcaacttcttcttcttctttttgttgttccttctcaatagaatttgggtgtaatgtcttcaatggagcacgtaacgctattccagcaataacccatt |
102 |
Q |
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| T |
29146157 |
atttcaatttcaacttcttctttttgttgttccttctcaatagaatttgtctgtattggcttcaatggagcacgtaacgctattccagctataacccatt |
29146256 |
T |
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| Q |
103 |
ttctactattattttctgattcaaaccctccttctactacttgtgccttctcagagtaccccatattggacccaacaaaataaatatgt |
191 |
Q |
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| T |
29146257 |
ttctactattattttctgattcaaaccctccttctactacttgtgccttctcagagtaccccatattggacccaaaaaaataaatatgt |
29146345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 29146361 - 29146403
Alignment:
| Q |
179 |
aaaataaatatgtgttagtataaagtaaggaatatgaagaaat |
221 |
Q |
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| T |
29146361 |
aaaataaatatgtgttagtataaagtaaggaatatgaagaaat |
29146403 |
T |
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