View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19387_low_2 (Length: 404)
Name: NF19387_low_2
Description: NF19387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19387_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 35142609 - 35142992
Alignment:
| Q |
5 |
gagaagcaaagggccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatg |
104 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35142609 |
gagaaacaaagagccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggtttttttatcttcttgactactttgttcatg |
35142708 |
T |
|
| Q |
105 |
tgtttctggtttcagatgtgcaacttcttcatatggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35142709 |
tgtttctggtttcagatgtgcaacttcttcatatggacatttt-tgtcaagtggtttcccacaaagattgacattacctttataactcgatgcatcgaaa |
35142807 |
T |
|
| Q |
205 |
ctctgcaactgcgtagcaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaatta |
304 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35142808 |
ctctgcaactgcgtactaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaatta |
35142907 |
T |
|
| Q |
305 |
aaccagagaaattgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaaatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35142908 |
aaccagagaaattgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttccccagtcaaatt |
35142992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 37165248 - 37164878
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc |
117 |
Q |
| |
|
||||| || ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37165248 |
ccccataggccccaaaatcctgtgataaatcccaatgccacactcaaataaattggcttttt-atcttcttgactactttcttcatgtgtttctggtttc |
37165150 |
T |
|
| Q |
118 |
agatgtgcaacttcttcatatggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaactgcg |
217 |
Q |
| |
|
|| |||||||||| || ||||||||||||||||||||||| ||||||||||| |||| |||| |||||| || |||||||||||||| ||||| | |
|
|
| T |
37165149 |
tgaggtgcaacttcatctctaggacattttttgtcaagtggtttgccacaaagatcagcattcccttcataacttgaggcatcgaaactctgtaactggg |
37165050 |
T |
|
| Q |
218 |
tagcaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaattaaaccagagaaatt |
317 |
Q |
| |
|
| ||||||||||| |||| || |||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
37165049 |
ttccaattggaattcttccggacaggttgttattggacagatttaacatggaaaggcgatcaatttgagttagagaatgaggaattaaaccagtgaaatg |
37164950 |
T |
|
| Q |
318 |
gtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaaatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||| |
|
|
| T |
37164949 |
gtttcttgacaagtcaagaaattcaagtgatgttaactttccaatcattgaagtaatttcccctgtcaaatt |
37164878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 37132797 - 37132427
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc |
117 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37132797 |
ccccataggccccaaaatcctgtgataaatcccaatgtcacgctcaaataaattggcttttt-atcttcttgactactttcttcatgtgtttctggttta |
37132699 |
T |
|
| Q |
118 |
agatgtgcaacttcttcatat---ggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaact |
214 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| ||||||||||||||||||||||| ||||| |||| |||||| || |||||||||||||| |||| |
|
|
| T |
37132698 |
tgatgtgcaacttcttcatctcctggacatattttttcaagtggtttcccacaaagatcaacattgccttgataacttgaagcatcgaaactctgtaact |
37132599 |
T |
|
| Q |
215 |
gcgtagcaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaattaaaccagagaa |
314 |
Q |
| |
|
|||| ||||||||||| ||||||| || |||||||| | | |||||||||||| | ||||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
37132598 |
gcgtgccaattggaattcttccagagagattgttatccgctagattcaacatggacacgcgatcaatttgagctagagaaggaggaattggaccagataa |
37132499 |
T |
|
| Q |
315 |
attgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaa |
386 |
Q |
| |
|
|| ||||||||||||||||||| | ||||||||||||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
37132498 |
atggtttcttgacaagtcaagagaatcaagtgatgttaaccttccaatcttcgaagaaatttctcctgtcaa |
37132427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 37139883 - 37139513
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc |
117 |
Q |
| |
|
||||| || ||| ||||||| || ||||||||||||| |||| |||||||||||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
37139883 |
ccccataggccccaaaatccagtcataaatcccaatgtcacacacaaataaattggtttttt-atcttcttgacttctttcttcatgtgtttctggttta |
37139785 |
T |
|
| Q |
118 |
agatgtgcaacttcttcatat---ggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaact |
214 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| || |||||||||||||||||||| ||||| |||| |||||| || |||||||||||||| |||| |
|
|
| T |
37139784 |
tgatgtgcaacttcttcatctcctggacatattttttcgagtggtttcccacaaagatcaacattgccttgataacttgaagcatcgaaactctgtaact |
37139685 |
T |
|
| Q |
215 |
gcgtagcaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaattaaaccagagaa |
314 |
Q |
| |
|
|||| ||||||||||| ||||||| || |||||||| || | |||||||| ||| ||||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
37139684 |
gcgtgccaattggaattcttccagagagattgttatcagatagattcaacacggacaggcgatcaatttgagctagagtaggaggaattggaccagagaa |
37139585 |
T |
|
| Q |
315 |
attgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaa |
386 |
Q |
| |
|
|| ||||||||||||||||||| | ||||||||| ||||||||||||||| |||| ||||||||| ||||| |
|
|
| T |
37139584 |
atggtttcttgacaagtcaagagaatcaagtgatattaaccttccaatcttcgaaggaatttctcctgtcaa |
37139513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 38749454 - 38749094
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc |
117 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
38749454 |
ccccatagtccccaaaatcctgtgataaatcccgatgccacactcaaataaattgg-ttttttatcttctggactactttcttctggtgtttctggtttc |
38749356 |
T |
|
| Q |
118 |
agatgtgcaacttcttcatatggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaactgcg |
217 |
Q |
| |
|
| | || || ||||||||||||||||||||||| |||||||||| ||||| |||| |||| | || |||| ||||||||||||||||| |
|
|
| T |
38749355 |
tcggg--------cctccta--gacattttttgtcaagtggtttctcacaaagatcaacattcccttcataatttgaggcattgaaactctgcaactgcg |
38749266 |
T |
|
| Q |
218 |
tagcaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaattaaaccagagaaatt |
317 |
Q |
| |
|
| ||||||||||| ||||||| | || ||||| ||| |||||||| ||| || | || ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
38749265 |
tgccaattggaattcttccagaccgattattatccaacagattcaacaaggacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatg |
38749166 |
T |
|
| Q |
318 |
gtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaaatt |
389 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
38749165 |
gtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaatttctccattcaaatt |
38749094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 138 - 389
Target Start/End: Original strand, 3022453 - 3022704
Alignment:
| Q |
138 |
tggacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaactgcgtagcaattggaatttttcca |
237 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||| |||| |||| | || |||| ||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
3022453 |
tggacatattttgtcaagtggtttcccacaaagatcaacattcccttcataatttgaggcattgaaactctgcagctgcgtgccaattggaattcttcca |
3022552 |
T |
|
| Q |
238 |
gataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaattaaaccagagaaattgtttcttgacaagtcaagaa |
337 |
Q |
| |
|
|| || | ||||| |||| |||||||| ||| | ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
3022553 |
gagagataattatccgacagattcaacaaggacaagcgatctatttgagctagagaaggtggaatcaaaccagagaaatggtttcttgacaagtcaagaa |
3022652 |
T |
|
| Q |
338 |
attcaagtgatgttaaccttccaatctctgaagtaatttctccagtcaaatt |
389 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
3022653 |
attcaagtgatgttaaccttccaatctttgaagtaatttttccattcaaatt |
3022704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 11242391 - 11242591
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattggnnnnnnnatcttcttgactactttgttcatgtgtttctggtttc |
117 |
Q |
| |
|
|||||||| ||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
11242391 |
ccccaaaggccccaaaatcctgtaataaatcctaatgccacactcaaataaattg-aattcatatcttctggactactttcttcaaaagtttctggtttt |
11242489 |
T |
|
| Q |
118 |
agatgtgcaacttcttcatatg---gacattttttgtcaagtggtttcccacaaagatcgacattacctttataactcgatgcatcgaaactctgcaact |
214 |
Q |
| |
|
|| |||||| |||||||| | ||||| | |||||||||||||||||| ||||||| ||||| |||| |||||| || || |||||||||||||||| |
|
|
| T |
11242490 |
tgaggtgcaatttcttcatcttcttgacatatgttgtcaagtggtttcccagaaagatcaacatttccttcataacttgaggcgtcgaaactctgcaact |
11242589 |
T |
|
| Q |
215 |
gc |
216 |
Q |
| |
|
|| |
|
|
| T |
11242590 |
gc |
11242591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 3022343 - 3022398
Alignment:
| Q |
18 |
ccccaaagtcccgaaaatcctgtgataaatcccaatgccacattcaaataaattgg |
73 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3022343 |
ccccatagtccccaaaatcctgtgataaatcccaatgccacactcaaataaattgg |
3022398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 13863393 - 13863314
Alignment:
| Q |
297 |
aggaattaaaccagagaaattgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaattt |
376 |
Q |
| |
|
||||||| ||||| | || |||||| |||||| ||||||||||||||||||||||||||||| || | ||||| ||||| |
|
|
| T |
13863393 |
aggaattgaaccaaacaacttgttttgtgacaaatcaagaaattcaagtgatgttaaccttccgatatttgaaggaattt |
13863314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University