View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19387_low_4 (Length: 226)

Name: NF19387_low_4
Description: NF19387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19387_low_4
NF19387_low_4
[»] chr6 (21 HSPs)
chr6 (20-222)||(8850473-8850675)
chr6 (131-211)||(28112172-28112252)
chr6 (30-156)||(12988432-12988557)
chr6 (118-211)||(31071941-31072033)
chr6 (128-208)||(6512892-6512972)
chr6 (131-211)||(28108196-28108276)
chr6 (131-163)||(2378914-2378946)
chr6 (131-163)||(3597189-3597221)
chr6 (131-163)||(11401941-11401973)
chr6 (131-163)||(13004873-13004905)
chr6 (131-163)||(26942842-26942874)
chr6 (131-163)||(28665671-28665703)
chr6 (131-163)||(30655128-30655160)
chr6 (133-208)||(2845941-2846016)
chr6 (132-163)||(5259621-5259652)
chr6 (30-156)||(13021561-13021686)
chr6 (131-161)||(11247448-11247478)
chr6 (131-163)||(10289657-10289689)
chr6 (131-163)||(11126103-11126135)
chr6 (131-163)||(11188323-11188355)
chr6 (131-163)||(22561571-22561603)
[»] chr3 (37 HSPs)
chr3 (30-223)||(27298756-27298949)
chr3 (45-221)||(27308887-27309063)
chr3 (30-222)||(27308315-27308507)
chr3 (30-211)||(18542270-18542452)
chr3 (30-156)||(11636608-11636733)
chr3 (27-163)||(22360214-22360349)
chr3 (131-211)||(35751174-35751254)
chr3 (128-163)||(29344266-29344301)
chr3 (30-163)||(45896148-45896281)
chr3 (27-208)||(22993989-22994168)
chr3 (131-184)||(7486317-7486370)
chr3 (131-164)||(27091661-27091694)
chr3 (131-184)||(30690482-30690535)
chr3 (131-211)||(47051215-47051295)
chr3 (131-163)||(2873332-2873364)
chr3 (131-163)||(3840284-3840316)
chr3 (131-163)||(11190294-11190326)
chr3 (131-163)||(20729041-20729073)
chr3 (131-163)||(24125267-24125299)
chr3 (131-163)||(24128544-24128576)
chr3 (131-163)||(25584455-25584487)
chr3 (131-163)||(32287718-32287750)
chr3 (131-163)||(41976783-41976815)
chr3 (131-163)||(43926603-43926635)
chr3 (131-163)||(47054693-47054725)
chr3 (131-163)||(50461943-50461975)
chr3 (131-163)||(54723509-54723541)
chr3 (131-184)||(30220403-30220456)
chr3 (27-163)||(22370117-22370252)
chr3 (41-101)||(282495-282555)
chr3 (131-163)||(17040416-17040448)
chr3 (131-163)||(19301899-19301931)
chr3 (131-163)||(19305083-19305115)
chr3 (131-163)||(22783360-22783392)
chr3 (131-163)||(22787724-22787756)
chr3 (131-163)||(28008464-28008496)
chr3 (131-163)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (41-223)||(31332-31514)
[»] chr1 (17 HSPs)
chr1 (41-223)||(37907563-37907745)
chr1 (41-211)||(7635281-7635451)
chr1 (30-211)||(27332077-27332258)
chr1 (41-163)||(34066758-34066880)
chr1 (31-184)||(34732667-34732819)
chr1 (117-211)||(6071348-6071441)
chr1 (131-211)||(27536693-27536773)
chr1 (131-163)||(20398537-20398569)
chr1 (131-163)||(21018873-21018905)
chr1 (131-163)||(23022331-23022363)
chr1 (131-163)||(28110741-28110773)
chr1 (131-163)||(31204522-31204554)
chr1 (131-163)||(37184271-37184303)
chr1 (131-163)||(41058709-41058741)
chr1 (131-163)||(45961152-45961184)
chr1 (131-161)||(45941102-45941132)
chr1 (131-163)||(11668433-11668465)
[»] chr5 (21 HSPs)
chr5 (31-194)||(563530-563692)
chr5 (41-218)||(31575045-31575222)
chr5 (30-126)||(18765947-18766044)
chr5 (30-150)||(21914818-21914937)
chr5 (131-211)||(17664187-17664267)
chr5 (131-211)||(7624737-7624817)
chr5 (131-211)||(20055409-20055489)
chr5 (30-163)||(41877071-41877204)
chr5 (131-184)||(26896011-26896064)
chr5 (131-184)||(26753109-26753162)
chr5 (131-163)||(7270699-7270731)
chr5 (131-163)||(14016546-14016578)
chr5 (131-163)||(18952376-18952408)
chr5 (131-163)||(22129948-22129980)
chr5 (131-163)||(30066025-30066057)
chr5 (131-163)||(33551804-33551836)
chr5 (131-163)||(34831446-34831478)
chr5 (131-163)||(41306934-41306966)
chr5 (128-163)||(18239900-18239935)
chr5 (131-163)||(4099929-4099961)
chr5 (131-163)||(18032141-18032173)
[»] scaffold0034 (1 HSPs)
scaffold0034 (30-223)||(48709-48902)
[»] scaffold0233 (1 HSPs)
scaffold0233 (30-208)||(9575-9753)
[»] chr2 (27 HSPs)
chr2 (29-207)||(35521671-35521850)
chr2 (42-184)||(22630486-22630627)
chr2 (118-211)||(31427938-31428030)
chr2 (131-211)||(9966712-9966792)
chr2 (131-211)||(33310283-33310363)
chr2 (131-211)||(45453491-45453571)
chr2 (131-211)||(45456778-45456858)
chr2 (131-184)||(43723345-43723398)
chr2 (131-163)||(8888300-8888332)
chr2 (131-163)||(9185832-9185864)
chr2 (131-163)||(9189061-9189093)
chr2 (131-163)||(11348304-11348336)
chr2 (131-163)||(13972302-13972334)
chr2 (131-163)||(22020733-22020765)
chr2 (131-163)||(25960097-25960129)
chr2 (131-163)||(27266453-27266485)
chr2 (131-163)||(30190001-30190033)
chr2 (131-163)||(38015183-38015215)
chr2 (131-163)||(40781137-40781169)
chr2 (131-163)||(42369119-42369151)
chr2 (110-177)||(6298117-6298183)
chr2 (131-161)||(5105393-5105423)
chr2 (134-164)||(24234759-24234789)
chr2 (137-211)||(31430104-31430178)
chr2 (131-161)||(43208298-43208328)
chr2 (131-164)||(24238031-24238064)
chr2 (135-163)||(37280089-37280117)
[»] chr7 (17 HSPs)
chr7 (30-139)||(24917888-24917998)
chr7 (131-211)||(14683856-14683936)
chr7 (31-199)||(2090241-2090408)
chr7 (118-211)||(6603080-6603172)
chr7 (30-163)||(7227197-7227330)
chr7 (108-163)||(18562923-18562977)
chr7 (131-209)||(11398438-11398516)
chr7 (131-163)||(9405927-9405959)
chr7 (131-163)||(9865139-9865171)
chr7 (131-163)||(17730484-17730516)
chr7 (117-211)||(13842262-13842355)
chr7 (118-163)||(16165418-16165462)
chr7 (118-163)||(48645144-48645188)
chr7 (131-163)||(4596421-4596453)
chr7 (131-163)||(4695194-4695226)
chr7 (131-163)||(23225318-23225350)
chr7 (131-163)||(23234471-23234503)
[»] scaffold0045 (1 HSPs)
scaffold0045 (131-211)||(89404-89484)
[»] chr8 (12 HSPs)
chr8 (131-218)||(7944352-7944439)
chr8 (131-211)||(36711063-36711143)
chr8 (118-163)||(22174319-22174363)
chr8 (131-163)||(12582688-12582720)
chr8 (131-163)||(16953456-16953488)
chr8 (131-163)||(18824802-18824834)
chr8 (131-163)||(18826295-18826327)
chr8 (131-184)||(2560248-2560301)
chr8 (131-163)||(5614135-5614167)
chr8 (131-163)||(5980720-5980752)
chr8 (131-163)||(30784610-30784642)
chr8 (135-163)||(38248811-38248839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (131-208)||(118854-118931)
[»] chr4 (32 HSPs)
chr4 (27-163)||(34018085-34018220)
chr4 (131-211)||(15405492-15405572)
chr4 (131-211)||(56195161-56195241)
chr4 (27-163)||(27691447-27691583)
chr4 (30-88)||(37740069-37740126)
chr4 (131-184)||(15436877-15436930)
chr4 (27-88)||(33493998-33494059)
chr4 (118-211)||(33926601-33926693)
chr4 (118-163)||(34320313-34320357)
chr4 (118-163)||(44809351-44809395)
chr4 (118-211)||(46955874-46955966)
chr4 (131-163)||(15163874-15163906)
chr4 (132-184)||(15430264-15430316)
chr4 (131-163)||(19820410-19820442)
chr4 (131-163)||(19827172-19827204)
chr4 (131-163)||(24150354-24150386)
chr4 (131-163)||(27677462-27677494)
chr4 (131-163)||(29324507-29324539)
chr4 (131-163)||(38283896-38283928)
chr4 (131-163)||(39501330-39501362)
chr4 (131-163)||(40903491-40903523)
chr4 (131-163)||(44164465-44164497)
chr4 (131-163)||(48637187-48637219)
chr4 (131-163)||(52006938-52006970)
chr4 (131-163)||(52531343-52531375)
chr4 (131-163)||(53094189-53094221)
chr4 (131-162)||(8877909-8877940)
chr4 (131-161)||(48415937-48415967)
chr4 (133-163)||(56198535-56198565)
chr4 (131-208)||(8448950-8449027)
chr4 (135-184)||(48014459-48014508)
chr4 (131-163)||(12782587-12782619)
[»] scaffold1684 (1 HSPs)
scaffold1684 (131-211)||(48-128)
[»] scaffold0250 (1 HSPs)
scaffold0250 (128-163)||(19078-19113)
[»] scaffold0757 (1 HSPs)
scaffold0757 (131-163)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (131-163)||(4196-4228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (131-163)||(84923-84955)
[»] scaffold0520 (2 HSPs)
scaffold0520 (131-159)||(4387-4415)
scaffold0520 (131-159)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (131-163)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 8850473 - 8850675
Alignment:
Q  20 aatctataaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcaga 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8850473 aatctataaatattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatgtttcaaacaggttacatcaga 8850572  T
Q  120 ttcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactat 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850573 ttcatcttcaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactat 8850672  T
Q  220 gag 222  Q
    |||    
T  8850673 gag 8850675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 28112172 - 28112252
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| |||||||||||    
T  28112172 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaacatacataaa 28112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 12988432 - 12988557
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 128  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| ||| | ||  |||||  ||| |||||||||| |||||||     
T  12988432 cattaagaaatattgaattgaataaaactagattgatattcacaat-aatagagcttcacagcaacatggttcaattagggttacatcagaatcatctc- 12988529  T
Q  129 aaacctaatctctaagagatttagctac 156  Q
    | ||||||||||||||||||||||||||    
T  12988530 agacctaatctctaagagatttagctac 12988557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 31072033 - 31071941
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||| ||||| |||||||||||    
T  31072033 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaataacataataaatggaagaattaaaacatacataaa 31071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 6512972 - 6512892
Alignment:
Q  128 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 208  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| | || ||||| ||||||||    
T  6512972 caaacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataatagaattaaaacatacat 6512892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 28108196 - 28108276
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacataaa 211  Q
    ||||||| | ||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  28108196 acctaatatataagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 28108276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 2378946 - 2378914
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  2378946 acctaatctctaagagatttagctactcataat 2378914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 3597189 - 3597221
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  3597189 acctaatctctaagagatttagctactcataat 3597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 11401973 - 11401941
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  11401973 acctaatctctaagagatttagctactcataat 11401941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 13004905 - 13004873
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  13004905 acctaatctctaagagatttagctactcataat 13004873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 26942842 - 26942874
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  26942842 acctaatctctaagagatttagctactcataat 26942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 28665671 - 28665703
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  28665671 acctaatctctaagagatttagctactcataat 28665703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 30655160 - 30655128
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  30655160 acctaatctctaagagatttagctactcataat 30655128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 2846016 - 2845941
Alignment:
Q  133 ctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 208  Q
    |||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| ||||||||    
T  2846016 ctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatataagaattaaaacatacat 2845941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 163
Target Start/End: Complemental strand, 5259652 - 5259621
Alignment:
Q  132 cctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||||||||    
T  5259652 cctaatctctaagagatttagctactcataat 5259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 13021561 - 13021686
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| | | | ||  |||||  | |||||||||||| |||||| |    
T  13021561 cattaagaaatattgaattgaataaaactagattgatattcacaa-taatagagcttcacaacaacatggttcaattagggttacatcagaatcatct-c 13021658  T
Q  129 aaacctaatctctaagagatttagctac 156  Q
    | |||||  |||||||||||||||||||    
T  13021659 agacctatcctctaagagatttagctac 13021686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 11247478 - 11247448
Alignment:
Q  131 acctaatctctaagagatttagctactcata 161  Q
    |||||||||||||||||||||||||||||||    
T  11247478 acctaatctctaagagatttagctactcata 11247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 10289689 - 10289657
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||| ||||||||||    
T  10289689 acctaatctctaagagatttagttactcataat 10289657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 11126103 - 11126135
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||| ||||||    
T  11126103 acctaatctctaagagatttagctacccataat 11126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 11188323 - 11188355
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||| ||||||||||||||||||||||||||||    
T  11188323 acctgatctctaagagatttagctactcataat 11188355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 22561571 - 22561603
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||| |||||||||||||||||||    
T  22561571 acctaatctctaaaagatttagctactcataat 22561603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 27298756 - 27298949
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||||| | |||| |||||||||||| |    
T  27298756 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagagtttcacagccacatgtttcaaacatgattacttcagattcatct-c 27298854  T
Q  129 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagt 223  Q
    | ||||||||||||||| |||||||||||| ||||| | |||||||||| ||| || |||| |||||| || |||||| |||| |||||||||||    
T  27298855 agacctaatctctaagacatttagctactcgtaatatggattacaaataccatcataaattgaagcataaaaacatacgtaaactgactatgagt 27298949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 27308887 - 27309063
Alignment:
Q  45 aattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatctctaa 143  Q
    |||||||||||| |||||| ||||||| |||||||||||||||| | ||| || ||||||||| | |||| ||||||||||||| | |||||||||||||    
T  27308887 aattgaataaaaatagattgatattcacaagcaatagagtttcacaaccaaatgtttcaaacaagattacttcagattcatctc-agacctaatctctaa 27308985  T
Q  144 gagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatga 221  Q
    ||||||||||||||||||||| |||||||||||||||| || | || |||||| || ||||||||||| | |||||||    
T  27308986 gagatttagctactcataatatgaattacaaataacatcatcagttgaagcataaaaacatacataaactaactatga 27309063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 27308315 - 27308507
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||| |||| || |||| |||||||||||| |    
T  27308315 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagattttcatagccacatgttttaaacaagattacttcagattcatct-c 27308413  T
Q  129 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgag 222  Q
    | |||||||||||||||||||||||||| ||||||| | ||| |||||||||| | |  || |||||| || |||||||||||  |||||||||    
T  27308414 agacctaatctctaagagatttagctacacataatatggattgcaaataacatcaatcgttgaagcataaaaacatacataaaccgactatgag 27308507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 18542452 - 18542270
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataa--gcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctc 127  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||   | |||||||||||| |   | |   |||||||||  ||||||| |||||||||    
T  18542452 cattaagaacaattgaattgaataaaactatattgatattcatatatgaaatagagtttcacattaacaaggttcaaacagagtacatcatattcatctc 18542353  T
Q  128 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
     ||||||||||||||| |||||||||||||||||||   | ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  18542352 -aaacctaatctctaaaagatttagctactcataattgaatttacaaatagcataatcaatggaagaattaaaacatacataaa 18542270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 11636733 - 11636608
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||  |||||||||||| ||| | ||  |||||  | |||||||||||| |||||| |    
T  11636733 cattaagaacaattgaattgaataaaactagattgatattcacaa-taatagagtttcacagcaacatggttcaattagggttacatcagaatcatct-c 11636636  T
Q  129 aaacctaatctctaagagatttagctac 156  Q
    | ||||||||||||||||||||||||||    
T  11636635 agacctaatctctaagagatttagctac 11636608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22360349 - 22360214
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 125  Q
    ||||||||| ||| ||||||||||||| || |||||| ||||||| ||| ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22360349 aaacattaagaacaattgaattgaatataaatagattgatattcacaagaaattgagtttcacatcaacatgtttaaattagggttaca-cataatcatc 22360251  T
Q  126 tccaaacctaatctctaagagatttagctactcataat 163  Q
    || | |||||||||||||||||||||||||||||||||    
T  22360250 tc-agacctaatctctaagagatttagctactcataat 22360214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 35751254 - 35751174
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  35751254 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 35751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 29344266 - 29344301
Alignment:
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344266 caaacctaatctctaagagatttagctactcataat 29344301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 45896281 - 45896148
Alignment:
Q  30 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 127  Q
    |||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| ||||  |||||  ||| |||||  ||| |||||||    
T  45896281 cattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaatatggttcaattagggttacaa-agaatcatctc 45896183  T
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
     | |||||||||||||||||||||||||||||||||    
T  45896182 -agacctaatctctaagagatttagctactcataat 45896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 22993989 - 22994168
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatc 125  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||| ||  |||||||||| | ||| | || ||| ||  | |||| || || | |||||    
T  22993989 aaacattaagaaaaattgaattgaataaaactagattgatattcacaataaatagagttttacagcaacatgtttaaattacggtttca-cataatcatc 22994087  T
Q  126 tccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 208  Q
    | || ||||||||||| |||||||||||||||||||||  || ||||||||| |||| | |||  ||| ||||| ||||||||    
T  22994088 t-cagacctaatctctgagagatttagctactcataat-tgagttacaaatagcatattcaatggaagaattaaaacatacat 22994168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 7486370 - 7486317
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  7486370 acctaatctctaagagatttagctactcataattgagtttacaaataacataat 7486317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 27091694 - 27091661
Alignment:
Q  131 acctaatctctaagagatttagctactcataata 164  Q
    ||||||||||||||||||||||||||||||||||    
T  27091694 acctaatctctaagagatttagctactcataata 27091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 30690535 - 30690482
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  30690535 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 30690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 47051295 - 47051215
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaatt-acaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||  || || ||||||| |||||| |||  ||| ||||| |||||||||||    
T  47051295 acctaatctctaagagatttagctactcataat-tgagttcacaaatagcataatcaatggaagaattaaaacatacataaa 47051215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 2873364 - 2873332
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  2873364 acctaatctctaagagatttagctactcataat 2873332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 3840316 - 3840284
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  3840316 acctaatctctaagagatttagctactcataat 3840284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 11190326 - 11190294
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  11190326 acctaatctctaagagatttagctactcataat 11190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 20729041 - 20729073
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  20729041 acctaatctctaagagatttagctactcataat 20729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 24125299 - 24125267
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  24125299 acctaatctctaagagatttagctactcataat 24125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 24128576 - 24128544
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  24128576 acctaatctctaagagatttagctactcataat 24128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 25584487 - 25584455
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  25584487 acctaatctctaagagatttagctactcataat 25584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 32287718 - 32287750
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  32287718 acctaatctctaagagatttagctactcataat 32287750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 41976815 - 41976783
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  41976815 acctaatctctaagagatttagctactcataat 41976783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 43926635 - 43926603
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  43926635 acctaatctctaagagatttagctactcataat 43926603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 47054725 - 47054693
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  47054725 acctaatctctaagagatttagctactcataat 47054693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 50461943 - 50461975
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  50461943 acctaatctctaagagatttagctactcataat 50461975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 54723541 - 54723509
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  54723541 acctaatctctaagagatttagctactcataat 54723509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 30220403 - 30220456
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 184  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||    
T  30220403 acctaatatctaagagatttagctactcataat-cgagtttacaaataacataat 30220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 163
Target Start/End: Complemental strand, 22370252 - 22370117
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 125  Q
    ||||||||| ||| ||||||||||||| || |||||| |||||||  || ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22370252 aaacattaagaacaattgaattgaatataaatagattgatattcacgagaaattgagtttcacaacaacatgtttaaattagggttaca-cataatcatc 22370154  T
Q  126 tccaaacctaatctctaagagatttagctactcataat 163  Q
    || | |||||||||||||||||||| ||||||||||||    
T  22370153 tc-agacctaatctctaagagattttgctactcataat 22370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 282495 - 282555
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatattt 101  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||||||||  |||| ||||||    
T  282495 attgaattgaataaaactagatttataattataatcaattgagtttcacggccacatattt 282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 17040416 - 17040448
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||| |||||||||||    
T  17040416 acctaatctctaagagatttaactactcataat 17040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 19301899 - 19301931
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||| |||||||||||||||    
T  19301899 acctaatctctaagagagttagctactcataat 19301931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 19305083 - 19305115
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||| |||||||||||||||    
T  19305083 acctaatctctaagagagttagctactcataat 19305115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 22783392 - 22783360
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||| |||||    
T  22783392 acctaatctctaagagatttagctacttataat 22783360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 22787756 - 22787724
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||| |||||    
T  22787756 acctaatctctaagagatttagctacttataat 22787724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 28008464 - 28008496
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||| ||||||||||||||||||||||||||    
T  28008464 acctaaactctaagagatttagctactcataat 28008496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 52309952 - 52309984
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||| |||||||||||||||||||||||||    
T  52309952 acctaatatctaagagatttagctactcataat 52309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 31514 - 31332
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 139  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | ||||||||||||||||| || |||||||||    
T  31514 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatct-cagacctaatct 31416  T
Q  140 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagt 223  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| |||||||||||    
T  31415 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagt 31332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 37907563 - 37907745
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 139  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | ||||||||||||||||| || |||||||||    
T  37907563 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatct-cagacctaatct 37907661  T
Q  140 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagt 223  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| |||||||||||    
T  37907662 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagt 37907745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 211
Target Start/End: Complemental strand, 7635451 - 7635281
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 139  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| | | | || ||| ||  ||| |||||||||| ||||||| | |||||||||    
T  7635451 attgaattgaataaaactagattgatattcataagaaatagagtttcacatcaacatgtttaaattagggttacatcagaatcatctc-acacctaatct 7635353  T
Q  140 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||| |||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  7635352 ctaagagatttaactactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 7635281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 27332077 - 27332258
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| | || ||| ||  | |||||||||||| |||| | |    
T  27332077 cattaataacaattgaattgaataaaactagattgatattcacaagaaataaagtttcatagcaacatgtttaaattagggttacatcagaatcat-ttc 27332175  T
Q  129 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    | ||||||||| |||||||||||||||||||||||     ||||| ||| |||||| ||| |||| ||||| |||||||||||    
T  27332176 agacctaatctttaagagatttagctactcataattgagtttacagatagcataatcaatgaaagaattaaaacatacataaa 27332258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 34066758 - 34066880
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 139  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||| | | | || ||| ||  | |||||||||| | |||||| || |||||||||    
T  34066758 attgaattgaataaaactagattgatattcacaagaaatagagtttcacaacaacatgtttaaattagggttacatcaaaatcatct-catacctaatct 34066856  T
Q  140 ctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||    
T  34066857 ctaagagatttagctactcataat 34066880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 34732667 - 34732819
Alignment:
Q  31 attaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctcca 129  Q
    ||||| ||| |||||||||||||||| ||||||||  ||||| ||   ||||||||||| ||| | |||||||||   ||||||| |||| ||||||| |    
T  34732667 attaagaacaattgaattgaataaaaactagattatcattcacaatagatagagtttcacagcaacatatttcaatagggttaca-cagaatcatctc-a 34732764  T
Q  130 aacctaatctctaagagatttagctactcataatacga-attacaaataacataat 184  Q
      |||||||||||| ||||||||||||||||||| |||  ||||||||||||||||    
T  34732765 ggcctaatctctaatagatttagctactcataat-cgagtttacaaataacataat 34732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 6071348 - 6071441
Alignment:
Q  117 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6071348 agattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6071441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 27536693 - 27536773
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||  ||||| |||||||||||    
T  27536693 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaaaaattaaaacatacataaa 27536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 20398569 - 20398537
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  20398569 acctaatctctaagagatttagctactcataat 20398537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 21018873 - 21018905
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  21018873 acctaatctctaagagatttagctactcataat 21018905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 23022331 - 23022363
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  23022331 acctaatctctaagagatttagctactcataat 23022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 28110773 - 28110741
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  28110773 acctaatctctaagagatttagctactcataat 28110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 31204554 - 31204522
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  31204554 acctaatctctaagagatttagctactcataat 31204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 37184271 - 37184303
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  37184271 acctaatctctaagagatttagctactcataat 37184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 41058709 - 41058741
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  41058709 acctaatctctaagagatttagctactcataat 41058741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 45961152 - 45961184
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  45961152 acctaatctctaagagatttagctactcataat 45961184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 45941132 - 45941102
Alignment:
Q  131 acctaatctctaagagatttagctactcata 161  Q
    |||||||||||||||||||||||||||||||    
T  45941132 acctaatctctaagagatttagctactcata 45941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 11668433 - 11668465
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||| ||||||    
T  11668433 acctaatctctaagagatttagctacacataat 11668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 563530 - 563692
Alignment:
Q  31 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaa 130  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||| | |||||||||||||| | ||| || ||||||||||  ||||||||| || |||||||    
T  563530 attaagaacaattaaattgaataaaactatattaatattcacatgcaatagagtttcacaaccacatgtttcaaacagtctacatcagaatcgtctccaa 563629  T
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagc 194  Q
    ||||||||||| || ||||||| ||||||||||   |||||||||||||||||| |||| ||||    
T  563630 acctaatctct-agtgatttagatactcataatgaaaattacaaataacataatcaattgaagc 563692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 31575222 - 31575045
Alignment:
Q  41 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 139  Q
    |||||||| |||||||||||||| ||||||| | | |||||||||||| | | | ||  |||||| | ||||||||||||||||||| || ||||| |||    
T  31575222 attgaattaaataaaactagattgatattcacatgaaatagagtttcacaacaacatggttcaaatagggttacatcagattcatct-cagacctactct 31575124  T
Q  140 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 218  Q
     ||||||||||| | |||||||||   |||||||||||||||||| |||  ||  ||||| ||||||||| ||||||||    
T  31575123 ttaagagatttaacaactcataattgaaattacaaataacataatcaatggaataattaaaacatacatatattgacta 31575045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 18765947 - 18766044
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatct 126  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||| ||||| || ||||||| ||| |||| ||||||||||||    
T  18765947 cattaaaaacaattgaattgaataaaactagattaatatgcacaagcaataaagtttcacagccacatgtttcaaataggattacctcagattcatct 18766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 21914937 - 21914818
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| || |||| ||  |||||||||||||||| | ||  |||||  | |||||||||||| |||||| |    
T  21914937 cattaagaacaattgaattgaataaaactagattgattttcacaa-taatagagtttcatagcaacatggttcaattagggttacatcagaatcatct-c 21914840  T
Q  129 aaacctaatctctaagagattt 150  Q
    | ||||||||||||||||||||    
T  21914839 agacctaatctctaagagattt 21914818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 17664267 - 17664187
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  17664267 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 17664187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 7624817 - 7624737
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  7624817 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 7624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 20055489 - 20055409
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  20055489 acctaatctctaagagatttagctactcataattgagtttacaaatagaataatcaatgaaagaattaaaacatacataaa 20055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 41877071 - 41877204
Alignment:
Q  30 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 127  Q
    |||||||||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| |||||||    
T  41877071 cattaaaaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatggttcaattagggttacaa-agaatcatctc 41877169  T
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
     | |||||||||||||||||||||||||||||||||    
T  41877170 -agacctaatctctaagagatttagctactcataat 41877204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 26896011 - 26896064
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 184  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  26896011 acctaatctctaagagatttagctactcataat-cgagtttacaaataacataat 26896064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 26753109 - 26753162
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  26753109 acctaatctctaagagatttagctactcataattgaatttacaaatatcataat 26753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 7270731 - 7270699
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  7270731 acctaatctctaagagatttagctactcataat 7270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 14016546 - 14016578
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  14016546 acctaatctctaagagatttagctactcataat 14016578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 18952408 - 18952376
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  18952408 acctaatctctaagagatttagctactcataat 18952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 22129980 - 22129948
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  22129980 acctaatctctaagagatttagctactcataat 22129948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 30066057 - 30066025
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  30066057 acctaatctctaagagatttagctactcataat 30066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 33551836 - 33551804
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  33551836 acctaatctctaagagatttagctactcataat 33551804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 34831478 - 34831446
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  34831478 acctaatctctaagagatttagctactcataat 34831446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 41306934 - 41306966
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  41306934 acctaatctctaagagatttagctactcataat 41306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 163
Target Start/End: Original strand, 18239900 - 18239935
Alignment:
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||| |||||||||||    
T  18239900 caaacctaatctctaagagatttaactactcataat 18239935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 4099929 - 4099961
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||| |||||||||||    
T  4099929 acctaatctctaagagatttatctactcataat 4099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 18032173 - 18032141
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||| |||||||    
T  18032173 acctaatctctaagagatttagctattcataat 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 48709 - 48902
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| | | ||||||||| || |   | || | |||| ||| || ||||||||||||||||     
T  48709 cattaagaacaattgaattgaataaaactagattgatattcacatgaaatagagttgcacattaacatgtctcaaccagagtaacatcagattcatctc- 48807  T
Q  129 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagt 223  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||| |||||| |||  ||| ||||| ||||||||||| |||||| ||||    
T  48808 aaacctaatctctaagagatttagccactcataattgtaattacaaatagcataatcaatggaagaattaaaacatacataaactgactacgagt 48902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 9753 - 9575
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 128  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||| | || ||| ||  | || ||||||||| |||||| |    
T  9753 cattaagaacaattgaattgaataaaactatattgatattcataagaaatagagtttcacagcaacatgtttaaattagggatacatcagaatcatct-c 9655  T
Q  129 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 208  Q
    | ||||||| |||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| | ||||||    
T  9654 agacctaatatctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaatatacat 9575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 35521671 - 35521850
Alignment:
Q  29 acattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctc 127  Q
    ||||||| ||| |||||||||| |||||||||||| |||  || | | |||||||||||| | | | ||  ||||||||  |||||||||||||||||||    
T  35521671 acattaagaacaattgaattgagtaaaactagattgatacccacatgaaatagagtttcacaacaacatggttcaaacaaagttacatcagattcatctc 35521770  T
Q  128 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacataca 207  Q
      |||||||||| ||| |||||||||||||||||||   ||||||||||| |||||| |||| |||||| || |||||||    
T  35521771 ataacctaatctttaatagatttagctactcataattgaaattacaaatagcataatcaatttaagcataaaaacataca 35521850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 22630627 - 22630486
Alignment:
Q  42 ttgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaaacctaatctc 140  Q
    ||||||||||||||| ||||||||  ||||| ||  |||||||||||| ||| | || ||||||  ||||||||| ||| ||||||| | |||||| |||    
T  22630627 ttgaattgaataaaaactagattatcattcacaataaatagagtttcacagcaacatgtttcaattaggttacat-agaatcatctc-agacctaacctc 22630530  T
Q  141 taagagatttagctactcataatacgaattacaaataacataat 184  Q
    ||| |||||||||||||||||||     ||||||||||||||||    
T  22630529 taatagatttagctactcataatggtgtttacaaataacataat 22630486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 31427938 - 31428030
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31427938 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 9966712 - 9966792
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||| |||||||||| ||| |||| ||||| | |||||||||    
T  9966712 acctaatctctaagagatttagctactcataattgagtttacatataacataatcaatgaaagaattaaaatatacataaa 9966792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 33310363 - 33310283
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||  ||||| |||||||||||    
T  33310363 acctaatctctaagagatttagctactcataattgagtttacaaataacataatcaatggaaaaattaaaacatacataaa 33310283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 45453571 - 45453491
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45453571 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45453491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 45456858 - 45456778
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45456858 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45456778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 43723398 - 43723345
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  43723398 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 43723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 8888332 - 8888300
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  8888332 acctaatctctaagagatttagctactcataat 8888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 9185832 - 9185864
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  9185832 acctaatctctaagagatttagctactcataat 9185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 9189061 - 9189093
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  9189061 acctaatctctaagagatttagctactcataat 9189093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 11348304 - 11348336
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  11348304 acctaatctctaagagatttagctactcataat 11348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 13972302 - 13972334
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  13972302 acctaatctctaagagatttagctactcataat 13972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 22020765 - 22020733
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  22020765 acctaatctctaagagatttagctactcataat 22020733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 25960097 - 25960129
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  25960097 acctaatctctaagagatttagctactcataat 25960129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 27266485 - 27266453
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  27266485 acctaatctctaagagatttagctactcataat 27266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 30190033 - 30190001
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  30190033 acctaatctctaagagatttagctactcataat 30190001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 38015215 - 38015183
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  38015215 acctaatctctaagagatttagctactcataat 38015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 40781169 - 40781137
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  40781169 acctaatctctaagagatttagctactcataat 40781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 42369119 - 42369151
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  42369119 acctaatctctaagagatttagctactcataat 42369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 6298183 - 6298117
Alignment:
Q  110 ttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaata 177  Q
    |||||||| ||||||||| | || ||||| ||| || |||||||||||||||||| ||||||||||||    
T  6298183 ttacatcacattcatctctagacataatccctagga-atttagctactcataataggaattacaaata 6298117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 5105423 - 5105393
Alignment:
Q  131 acctaatctctaagagatttagctactcata 161  Q
    |||||||||||||||||||||||||||||||    
T  5105423 acctaatctctaagagatttagctactcata 5105393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 24234789 - 24234759
Alignment:
Q  134 taatctctaagagatttagctactcataata 164  Q
    |||||||||||||||||||||||||||||||    
T  24234789 taatctctaagagatttagctactcataata 24234759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 31430104 - 31430178
Alignment:
Q  137 tctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31430104 tctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31430178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 43208298 - 43208328
Alignment:
Q  131 acctaatctctaagagatttagctactcata 161  Q
    |||||||||||||||||||||||||||||||    
T  43208298 acctaatctctaagagatttagctactcata 43208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 24238064 - 24238031
Alignment:
Q  131 acctaatctctaagagatttagctactcataata 164  Q
    ||||||||||||| ||||||||||||||||||||    
T  24238064 acctaatctctaaaagatttagctactcataata 24238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 37280089 - 37280117
Alignment:
Q  135 aatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||    
T  37280089 aatctctaagagatttagctactcataat 37280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 24917998 - 24917888
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcc 128  Q
    |||||| ||| |||| |||||||||||||| ||||||||||| | |||||||||||||| ||| | |||||||||||| || |||||  || ||||||||    
T  24917998 cattaagaacaattggattgaataaaactaaattaatattcacatgcaatagagtttcacagcgacatatttcaaacaagtctacatacgaatcatctcc 24917899  T
Q  129 aaacctaatct 139  Q
    | |||||||||    
T  24917898 agacctaatct 24917888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 14683856 - 14683936
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  14683856 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataaaagaattaaaacatacataaa 14683936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 2090408 - 2090241
Alignment:
Q  31 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcca 129  Q
    ||||| ||| |||||||||||||| |||||||||||| || ||  | ||||||||||| | ||| ||||||||||| ||  |||||||   |||||||||    
T  2090408 attaagaacaattgaattgaataagactagattaataatcttatac-atagagtttcacaaccacatatttcaaacaagcctacatcaagatcatctcca 2090310  T
Q  130 aacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaa 199  Q
     || ||||||||||  ||||||||||  ||||||   |||||||||||||| ||| || | |||||||||    
T  2090309 gacgtaatctctaa-tgatttagctatacataatgaaaattacaaataacacaatcaaatgaagcattaa 2090241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 6603172 - 6603080
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6603172 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 7227330 - 7227197
Alignment:
Q  30 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 127  Q
    |||||| ||| |||||||||||||||| ||| |||   ||||| ||  |||||||||||||||| | || ||||||  ||| ||||| |||| ||||||     
T  7227330 cattaagaacaattgaattgaataaaaactaaattgtcattcacaataaatagagtttcatagcaacatgtttcaattagggttaca-cagaatcatctt 7227232  T
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
     | |||||||||||||||||||||||||||||||||    
T  7227231 -agacctaatctctaagagatttagctactcataat 7227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 18562923 - 18562977
Alignment:
Q  108 ggttacatcagattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  18562923 ggttacatcagaatcatctc-agacctaatctctaagagatttagctacttataat 18562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 11398438 - 11398516
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacata 209  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||    
T  11398438 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacata 11398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 9405959 - 9405927
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  9405959 acctaatctctaagagatttagctactcataat 9405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 9865139 - 9865171
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  9865139 acctaatctctaagagatttagctactcataat 9865171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 17730516 - 17730484
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  17730516 acctaatctctaagagatttagctactcataat 17730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 13842355 - 13842262
Alignment:
Q  117 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  13842355 agattcatctc-agacctaatctctaatagatttagctacgcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 13842262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 16165462 - 16165418
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||    
T  16165462 gattcatctc-agacctaatctctaagagatttaactactcataat 16165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 48645188 - 48645144
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||    
T  48645188 gattcatctc-agacctaatctctaagagatttagctacgcataat 48645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 4596421 - 4596453
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||| ||||||    
T  4596421 acctaatctctaagagatttagctacacataat 4596453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 4695226 - 4695194
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||| |||||||||||||||||||    
T  4695226 acctaatctctaaaagatttagctactcataat 4695194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 23225318 - 23225350
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||| |||||||||||    
T  23225318 acctaatctctaagagatttaactactcataat 23225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 23234471 - 23234503
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||| |||||||||||    
T  23234471 acctaatctctaagagatttaactactcataat 23234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 89484 - 89404
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||| ||| ||||| |||||||||||    
T  89484 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattgaagaattaaaacatacataaa 89404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 7944352 - 7944439
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 218  Q
    ||||||| ||||| ||||||| |||||||||||  | |||||||||||||| || |||| ||||||||| ||| ||||||| ||||||    
T  7944352 acctaatttctaatagatttaactactcataattggtattacaaataacatgatcaattgaagcattaaaacagacataaactgacta 7944439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 36711063 - 36711143
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  36711063 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 36711143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 22174319 - 22174363
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  22174319 gattcatctc-agacctaatctctaagagatttagctactcataat 22174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 12582720 - 12582688
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  12582720 acctaatctctaagagatttagctactcataat 12582688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 16953488 - 16953456
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  16953488 acctaatctctaagagatttagctactcataat 16953456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 18824802 - 18824834
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  18824802 acctaatctctaagagatttagctactcataat 18824834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 18826295 - 18826327
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  18826295 acctaatctctaagagatttagctactcataat 18826327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 2560301 - 2560248
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||| ||||||||||||||||||||||||||     ||||||||||||||||    
T  2560301 acctaacctctaagagatttagctactcataatggtgtttacaaataacataat 2560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 5614135 - 5614167
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||| |||||    
T  5614135 acctaatctctaagagatttagctacttataat 5614167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 5980720 - 5980752
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||| ||||||||||||||||||||||||    
T  5980720 acctaatccctaagagatttagctactcataat 5980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 30784642 - 30784610
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||| ||||||||||||||||||||||||||    
T  30784642 acctaacctctaagagatttagctactcataat 30784610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 38248811 - 38248839
Alignment:
Q  135 aatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||    
T  38248811 aatctctaagagatttagctactcataat 38248839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 118854 - 118931
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacat 208  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||  ||||||||||||||    
T  118854 acctaatctctaagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaataattaacacatacat 118931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 34018085 - 34018220
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatc 125  Q
    ||||||||| ||| |||||||||||||||| ||||| |   ||||| ||  |||||||||||| ||| | ||  |||||  ||||||||  ||| |||||    
T  34018085 aaacattaagaacaattgaattgaataaaaactagactgtcattcacaataaatagagtttcacagcaacatggttcaattaggttacaa-agaatcatc 34018183  T
Q  126 tccaaacctaatctctaagagatttagctactcataat 163  Q
    || | |||||||||||||||||||||||||||||||||    
T  34018184 tc-agacctaatctctaagagatttagctactcataat 34018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 15405492 - 15405572
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  15405492 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 15405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 56195241 - 56195161
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  56195241 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 56195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 163
Target Start/End: Original strand, 27691447 - 27691583
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcat 124  Q
    ||||||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| ||||    
T  27691447 aaacattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatgattcaattagggttacaa-agaatcat 27691545  T
Q  125 ctccaaacctaatctctaagagatttagctactcataat 163  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  27691546 ctc-agacctaatctctaagagatttagctactcataat 27691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 37740069 - 37740126
Alignment:
Q  30 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 88  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  37740069 cattaacaacaattgaattgaataaaactagattaatattcacaa-taatagagtttca 37740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 15436877 - 15436930
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15436877 acctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15436930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 33493998 - 33494059
Alignment:
Q  27 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 88  Q
    ||||||||| ||| |||||||| |||||||||| ||| ||||||||| | ||||||||||||    
T  33493998 aaacattaacaacaattgaattaaataaaactaaattgatattcatatgaaatagagtttca 33494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 33926693 - 33926601
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||| | |||||||||||||||||||||| ||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  33926693 gattcatctc-agacctaatctctaagagatttagttactcataattgagtttacaaatagtataatcaatgaaagaattaaaacatacataaa 33926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 34320313 - 34320357
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  34320313 gattcatctc-agacctaatctctaagagatttagctactcataat 34320357  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 44809351 - 44809395
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataat 163  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  44809351 gattcatctc-agacctaatctctaagagatttagctactcataat 44809395  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 211
Target Start/End: Original strand, 46955874 - 46955966
Alignment:
Q  118 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  46955874 gattcatctc-agacctaatctttaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 46955966  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 15163906 - 15163874
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  15163906 acctaatctctaagagatttagctactcataat 15163874  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 15430264 - 15430316
Alignment:
Q  132 cctaatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15430264 cctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15430316  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 19820442 - 19820410
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  19820442 acctaatctctaagagatttagctactcataat 19820410  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 19827204 - 19827172
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  19827204 acctaatctctaagagatttagctactcataat 19827172  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 24150386 - 24150354
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  24150386 acctaatctctaagagatttagctactcataat 24150354  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 27677462 - 27677494
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  27677462 acctaatctctaagagatttagctactcataat 27677494  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 29324539 - 29324507
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  29324539 acctaatctctaagagatttagctactcataat 29324507  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 38283896 - 38283928
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  38283896 acctaatctctaagagatttagctactcataat 38283928  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 39501362 - 39501330
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  39501362 acctaatctctaagagatttagctactcataat 39501330  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 40903491 - 40903523
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  40903491 acctaatctctaagagatttagctactcataat 40903523  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 44164497 - 44164465
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  44164497 acctaatctctaagagatttagctactcataat 44164465  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 48637219 - 48637187
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  48637219 acctaatctctaagagatttagctactcataat 48637187  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 52006938 - 52006970
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  52006938 acctaatctctaagagatttagctactcataat 52006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 52531343 - 52531375
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  52531343 acctaatctctaagagatttagctactcataat 52531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 53094221 - 53094189
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  53094221 acctaatctctaagagatttagctactcataat 53094189  T

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Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 162
Target Start/End: Original strand, 8877909 - 8877940
Alignment:
Q  131 acctaatctctaagagatttagctactcataa 162  Q
    ||||||||||||||||||||||||||||||||    
T  8877909 acctaatctctaagagatttagctactcataa 8877940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Original strand, 48415937 - 48415967
Alignment:
Q  131 acctaatctctaagagatttagctactcata 161  Q
    |||||||||||||||||||||||||||||||    
T  48415937 acctaatctctaagagatttagctactcata 48415967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 56198565 - 56198535
Alignment:
Q  133 ctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||    
T  56198565 ctaatctctaagagatttagctactcataat 56198535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 8448950 - 8449027
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 208  Q
    |||||||||||||||||||||| ||||||||||     ||||||||| |||||| ||| |||  ||||| ||||||||    
T  8448950 acctaatctctaagagatttagttactcataattgagtttacaaatagcataataaatgaaataattaaaacatacat 8449027  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 48014459 - 48014508
Alignment:
Q  135 aatctctaagagatttagctactcataatacgaattacaaataacataat 184  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||    
T  48014459 aatctctaagagatttagctactcataattgagtttacaaataacataat 48014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 12782619 - 12782587
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||| ||||||||||||||||||||||||||    
T  12782619 acctaacctctaagagatttagctactcataat 12782587  T

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Target: scaffold1684 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 48 - 128
Alignment:
Q  131 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 211  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  48 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 19113 - 19078
Alignment:
Q  128 caaacctaatctctaagagatttagctactcataat 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  19113 caaacctaatctctaagagatttagctactcataat 19078  T

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Target: scaffold0757 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 5067 - 5035
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  5067 acctaatctctaagagatttagctactcataat 5035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 4196 - 4228
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  4196 acctaatctctaagagatttagctactcataat 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 84955 - 84923
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    |||||||||||||||||||||||||||||||||    
T  84955 acctaatctctaagagatttagctactcataat 84923  T

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Target: scaffold0520 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 4387 - 4415
Alignment:
Q  131 acctaatctctaagagatttagctactca 159  Q
    |||||||||||||||||||||||||||||    
T  4387 acctaatctctaagagatttagctactca 4415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 8626 - 8654
Alignment:
Q  131 acctaatctctaagagatttagctactca 159  Q
    |||||||||||||||||||||||||||||    
T  8626 acctaatctctaagagatttagctactca 8654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 82 - 114
Alignment:
Q  131 acctaatctctaagagatttagctactcataat 163  Q
    ||||||| |||||||||||||||||||||||||    
T  82 acctaatttctaagagatttagctactcataat 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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