View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_high_1 (Length: 604)
Name: NF19388_high_1
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Original strand, 29006025 - 29006592
Alignment:
| Q |
19 |
cataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggc |
118 |
Q |
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| T |
29006025 |
cataggcacctccaaatacccatactatacatctcatatcaaactaagaatgagaagttgtcacataaagcaaacaaatgtaactctgattcctagtggc |
29006124 |
T |
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| Q |
119 |
cccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgt |
218 |
Q |
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| T |
29006125 |
cccgacataaaaaataaataatgaatccaaagacaagggtcagggggtcaagaagcaagttggagctttaattgacaccagttgtctacatacctgttgt |
29006224 |
T |
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| Q |
219 |
ttatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgt |
318 |
Q |
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| T |
29006225 |
ttatggtgataataatgtctaaatattcattaagaagaatgtgctaggtagatgacctaagaataagactcaatcatgtttgccattataaatgacatgt |
29006324 |
T |
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| Q |
319 |
ctcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaatagga |
418 |
Q |
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| T |
29006325 |
ctcttttcttattaaacactaatggaaacaactcacaaaatgcttggacacgttgttatggcacaagtatgttgtgtggacctgaagctatagaatagga |
29006424 |
T |
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| Q |
419 |
acaagttgaagcaaactagcaatggcatgaatcaagatttagagtcctgacgaaggggatgggagttgaacctactccctttaaggaccatgaatcaact |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29006425 |
acaagttgaagcaaactagcaatggcatgaatcaagatttagagtcctgacgaaggggatgggagttgaatctactccctttaaggaccatgaatcaact |
29006524 |
T |
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| Q |
519 |
atttatcaattaaacctacctatatgttacatgtatacccattaaaaatgatttggagaagttcattt |
586 |
Q |
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| T |
29006525 |
atttatcaattaaaccaacctatatgttacatgtttacccattaaaaatgatttggagaatttcattt |
29006592 |
T |
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