View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19388_high_10 (Length: 287)

Name: NF19388_high_10
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19388_high_10
NF19388_high_10
[»] chr5 (4 HSPs)
chr5 (14-159)||(10282211-10282357)
chr5 (14-160)||(3881233-3881380)
chr5 (15-159)||(28277695-28277836)
chr5 (74-157)||(16642578-16642662)
[»] chr1 (8 HSPs)
chr1 (14-160)||(47703386-47703532)
chr1 (14-159)||(40816287-40816432)
chr1 (74-159)||(19073422-19073507)
chr1 (74-159)||(19121312-19121397)
chr1 (14-118)||(28266014-28266118)
chr1 (15-159)||(47255992-47256133)
chr1 (62-157)||(17345045-17345141)
chr1 (71-118)||(50169673-50169720)
[»] chr4 (7 HSPs)
chr4 (14-159)||(24334553-24334698)
chr4 (14-125)||(3793585-3793697)
chr4 (14-118)||(45687622-45687726)
chr4 (1-86)||(46147769-46147854)
chr4 (16-117)||(36463830-36463931)
chr4 (122-160)||(3792485-3792523)
chr4 (71-117)||(52467817-52467863)
[»] chr8 (7 HSPs)
chr8 (1-159)||(9765346-9765503)
chr8 (15-153)||(26402684-26402823)
chr8 (14-159)||(6127725-6127871)
chr8 (14-118)||(5688888-5688992)
chr8 (14-118)||(40320723-40320827)
chr8 (14-159)||(8149939-8150081)
chr8 (14-117)||(18141459-18141562)
[»] scaffold0148 (1 HSPs)
scaffold0148 (14-159)||(11231-11376)
[»] chr2 (5 HSPs)
chr2 (14-157)||(42269872-42270016)
chr2 (14-160)||(31056546-31056693)
chr2 (14-118)||(34681824-34681928)
chr2 (14-118)||(36773187-36773291)
chr2 (14-118)||(33162855-33162959)
[»] chr6 (2 HSPs)
chr6 (18-159)||(21800871-21801012)
chr6 (14-118)||(3039361-3039466)
[»] scaffold0477 (1 HSPs)
scaffold0477 (14-159)||(5405-5552)
[»] chr3 (8 HSPs)
chr3 (14-158)||(25796280-25796424)
chr3 (18-160)||(47650074-47650217)
chr3 (22-159)||(3715441-3715579)
chr3 (14-159)||(28073999-28074142)
chr3 (14-118)||(29196858-29196962)
chr3 (14-117)||(9666894-9666997)
chr3 (14-114)||(44700918-44701018)
chr3 (71-121)||(24177028-24177078)
[»] chr7 (5 HSPs)
chr7 (13-159)||(29160261-29160407)
chr7 (204-282)||(20081852-20081931)
chr7 (14-118)||(24526344-24526449)
chr7 (27-118)||(22269374-22269464)
chr7 (39-118)||(12098250-12098329)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 10282211 - 10282357
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatc-tgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||||||| || ||||||||||    
T  10282211 catcgtgccacgttcctcctggatcgtgccacgatttttccagcgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 10282310  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10282311 cgatttctcggtgcttcaacatccaattcttgagtcaattttcaaca 10282357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 3881233 - 3881380
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatc-tgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    |||||| |||||||||| |||||| ||||||||| ||||||| ||| ||||||||| | ||||||||||||||||||||||||||| || ||||||||||    
T  3881233 catcgtaccacgttcctcctggatcgtgccacgatttttccaacgataaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 3881332  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaacat 160  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||    
T  3881333 cgatttatcagtgcttcaatattcaattcttgagtcaattttcaacat 3881380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 28277836 - 28277695
Alignment:
Q  15 atcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacg 114  Q
    ||||||||||  |||| |||||| ||||||| | |||||||  || || |||||| || ||||||||||||||||||||||||| || ||||||||||||    
T  28277836 atcgtgccacactcctcctggatcgtgccacaatttttccaatgacaa-cccaaacctaaaccatccaatcgtgccacgttgccctgcaaacgtgccacg 28277738  T
Q  115 atttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||| ||    ||||| ||| ||||| ||||||||||||||||||    
T  28277737 atttttctagacttcaccat-caatt-ttgagtcaattttcaaca 28277695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 16642578 - 16642662
Alignment:
Q  74 aaccatccaatcgtgccacgttgccgtggaaacgtgccacgatttct-cagtgcttcaacatccaattcttgagtcaattttcaa 157  Q
    ||||||||||||||||||||||||  || |||||||||||||||| | |||  ||| ||||||||| | ||||||||||||||||    
T  16642578 aaccatccaatcgtgccacgttgctctgcaaacgtgccacgatttttccagaactttaacatccaaattttgagtcaattttcaa 16642662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 47703532 - 47703386
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||||||||||||||||||||| |||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||| |||| ||    
T  47703532 catcgtgccacgttccttctggatcgtgctacgaattttccagcgacaaacccaaatttgaaccatccaatcgtgccacgttgccctgcaaatgtgctac 47703433  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaacat 160  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  47703432 gatttctcagtgtttcgacatccaattcttgagtcaatttacaacat 47703386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 40816432 - 40816287
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccg-tggaaacgtgcca 112  Q
    ||||||||||||||||| |||||| ||||||||| |||||||  || ||||| ||| ||||||||||||||||| ||| ||||||  || |||| |||||    
T  40816432 catcgtgccacgttcctcctggatcgtgccacgatttttccaatgacaaacc-aaacctgaaccatccaatcgtaccatgttgcccctgcaaacatgcca 40816334  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  40816333 cgatttttcagtgcttcaacatccaatttttgagtcaattttcaaca 40816287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 19073422 - 19073507
Alignment:
Q  74 aaccatccaatcgtgccacgttgccgtggaaacgtgccacgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    ||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19073422 aaccatccaatcgtgccacgttgccttgcaaacgtgccaccatttttcagtgcttcaacatccaattcttgagtcaattttcaaca 19073507  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 19121312 - 19121397
Alignment:
Q  74 aaccatccaatcgtgccacgttgccgtggaaacgtgccacgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    ||||||||||||||||||||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  19121312 aaccatccaatcgtgccacgttgccttgcaaacgtgccaccatttttcagtgcttcaacatccaattcttgagtcaattttcaaca 19121397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 28266014 - 28266118
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||||||| ||||||  ||||| ||||||||| |||||||| |  || || ||||||||||||| |||||||||||||||||| || ||||||||||     
T  28266014 catcgtgccatgttcctcttggatcgtgccacgatttttccagtggcaacccaaaatctgaaccattcaatcgtgccacgttgccctgcaaacgtgccat 28266113  T
Q  114 gattt 118  Q
    |||||    
T  28266114 gattt 28266118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 159
Target Start/End: Original strand, 47255992 - 47256133
Alignment:
Q  15 atcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacg 114  Q
    ||||||||||  |||| || ||| ||||||||| |||||||| || || | |||| |||||||||||||||||||||||||||  || ||||||||||||    
T  47255992 atcgtgccacactcctcctagatcgtgccacgatttttccagtgacaa-ctcaaacctgaaccatccaatcgtgccacgttgcactgcaaacgtgccacg 47256090  T
Q  115 atttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||| ||    ||||| ||| ||||| ||||||||||||||||||    
T  47256091 atttttccagacttcaccat-caatt-ttgagtcaattttcaaca 47256133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 17345141 - 17345045
Alignment:
Q  62 aacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgatttctcag-tgcttcaacatccaattcttgagtcaattttcaa 157  Q
    |||| ||| ||||| ||||||||||||||||||| |  |  |||  ||||| ||||| || | ||||||||||| ||||||||||||||||||||||    
T  17345141 aacctaaacctgaatcatccaatcgtgccacgttactctacaaatttgccatgatttttccggtgcttcaacattcaattcttgagtcaattttcaa 17345045  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 50169673 - 50169720
Alignment:
Q  71 ctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgattt 118  Q
    ||||||||| |||||||| ||||||||| || ||||||||||||||||    
T  50169673 ctgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgattt 50169720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 24334553 - 24334698
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| || |||||||||||    
T  24334553 catcgtgccacgttccttctggatcgtgccacaaattttccaacgacaaatccaaatctgaaccatccaatcgtgacacgttgccctgcaaacgtgccac 24334652  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||    
T  24334653 gatttctcagtgcttcaacatcaaattcttgaggcaatttacaaca 24334698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 3793697 - 3793585
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaa-atctgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    |||||| ||| |||||| |||||| ||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||| ||| || || ||||||||||    
T  3793697 catcgttccatgttcctcctggatcgtgccacgatttttccagcgaaaaacccaatatctgaaccatccaatcgtaccatgtttccctgcaaacgtgcca 3793598  T
Q  113 cgatttctcagtg 125  Q
    |||||||| ||||    
T  3793597 cgatttcttagtg 3793585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 45687622 - 45687726
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||| ||||||||| |||||| ||||||||| |||||||| |  || || ||| ||||||||| ||||||| |||||||||| || |||||||||||    
T  45687622 catcgtgtcacgttcctcctggatcgtgccacgacttttccagtggcaacccaaaaactgaaccattcaatcgtaccacgttgccctgcaaacgtgccac 45687721  T
Q  114 gattt 118  Q
    |||||    
T  45687722 gattt 45687726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46147769 - 46147854
Alignment:
Q  1 ccttatttgtccacatcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcg 86  Q
    ||||||| |||  ||||||||||||||||| |||||| ||||||||| |||||||| || ||||||||| ||||||||| ||||||    
T  46147769 ccttattcgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaacctgaaccattcaatcg 46147854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 36463830 - 36463931
Alignment:
Q  16 tcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacga 115  Q
    ||||||||||||||| ||| || ||||||||| |||| ||  |  || || ||| ||||||||| |||||||| ||||||||| || |||||||||||||    
T  36463830 tcgtgccacgttcctcctgcatcgtgccacgattttttcaatggcaacccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacga 36463929  T
Q  116 tt 117  Q
    ||    
T  36463930 tt 36463931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 3792523 - 3792485
Alignment:
Q  122 agtgcttcaacatccaattcttgagtcaattttcaacat 160  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  3792523 agtgcttcaacatccaattcttgagttaattttcaacat 3792485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 52467817 - 52467863
Alignment:
Q  71 ctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgatt 117  Q
    ||||||||| |||||||||||||||||| || |||||||||||||||    
T  52467817 ctgaaccattcaatcgtgccacgttgccctgcaaacgtgccacgatt 52467863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9765503 - 9765346
Alignment:
Q  1 ccttatttgtccacatcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgt 100  Q
    |||||| ||||  ||||||||||||||||| |||||| |||||| || |||||| | || |||||||||| ||||||||||||||||||||||||||| |    
T  9765503 ccttatctgtctgcatcgtgccacgttcctcctggatcgtgccatgatttttcc-gtgacaaacccaaatatgaaccatccaatcgtgccacgttgccct 9765405  T
Q  101 ggaaacgtgccacgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9765404 gcaaacgtgccacgatttctcagtgcttcaacatcaaattcttgagtcaattttcaaca 9765346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 26402823 - 26402684
Alignment:
Q  15 atcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaa-tctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||| ||||||| | ||| || ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  26402823 atcgtgtcacgttcatcctgaatcgtgccacgaattttccagctataaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 26402724  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattt 153  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  26402723 gatttctcagcgcttcaacatccaattcttgagtcaattt 26402684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 6127725 - 6127871
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaa-tctgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    ||||||| |||||||||  ||||| ||||||| | ||||| ||||| ||||||||| ||||||||||||||||||||||| ||||| || |||||||| |    
T  6127725 catcgtgtcacgttcctattggatcgtgccacaatttttctagcgacaaacccaaaatctgaaccatccaatcgtgccacattgccctgcaaacgtgcta 6127824  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||    
T  6127825 caatttctcagtgcttcaatatccaattcttgagtcaattttcaaca 6127871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 5688992 - 5688888
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||||| |||| ||| || || |  ||| ||||||||| |||||||||||||||||| || |||||||||||    
T  5688992 catcgtgccacgttcctcctggatcgtgccacgattttttcagtgacaaccaaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 5688893  T
Q  114 gattt 118  Q
    |||||    
T  5688892 gattt 5688888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 40320827 - 40320723
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| ||  |||||||||||| |||||||| |  || || ||| ||||||||| |||||||||||||||||| || |||| ||||||    
T  40320827 catcgtgccacgttcctcctacattgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgccac 40320728  T
Q  114 gattt 118  Q
    |||||    
T  40320727 gattt 40320723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 8149939 - 8150081
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||| ||| ||||| || ||| ||||||||||||||| || |  || || ||| ||||||||| |||||||||||| ||||| || |||||||||||    
T  8149939 catcgtgtcacattcctcctagatcgtgccacgaattttctagtggcaacccaaaaactgaaccattcaatcgtgccacattgccctgcaaacgtgccac 8150038  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||||  |||  ||||| ||| ||||| ||||||||||||||||||    
T  8150039 gattttccag-acttcaccat-caatt-ttgagtcaattttcaaca 8150081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 18141562 - 18141459
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||  | |||||||| |  || || ||| ||||||| | ||||||||| |||||||| || |||||||||||    
T  18141562 catcgtgccacgttcctcctggatcgtgccataatttttccagtggcaacccaaaaactgaaccgttcaatcgtgcgacgttgccctgcaaacgtgccac 18141463  T
Q  114 gatt 117  Q
    ||||    
T  18141462 gatt 18141459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 11231 - 11376
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||||||  || ||||||| ||||||| ||| | |||| ||| ||||||||||| ||||||||||||||||| || |||||||||||    
T  11231 catcgtgccacgttccttctaaatcgtgccacaaattttcgagcaacaaactcaattctgaaccatctaatcgtgccacgttgccctgcaaacgtgccac 11330  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11331 gatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 11376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 42269872 - 42270016
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatc-tgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    |||| |||||||||||| ||||||  |||||||| ||||||||||| |||| |||| | ||||||||||||||||||||||||||| || ||||||||||    
T  42269872 catcatgccacgttcctcctggatcctgccacgatttttccagcgacaaacgcaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 42269971  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42269972 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaa 42270016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 31056546 - 31056693
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaa-tctgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    |||||||||| ||||||||||||| |||||| || |||||||| || ||||||||| ||||||||||||||| ||||||||||||| || ||| ||||||    
T  31056546 catcgtgccatgttccttctggatcgtgccatgatttttccagtgacaaacccaaaatctgaaccatccaattgtgccacgttgccctgcaaatgtgcca 31056645  T
Q  113 cgatttctcagtgcttcaacatccaattcttgagtcaattttcaacat 160  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  31056646 cgattttacagagcttcaacatccaattcttgagtcaattttcaacat 31056693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 34681928 - 34681824
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| || |||||||||||    
T  34681928 catcgtgccacgttcctactggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 34681829  T
Q  114 gattt 118  Q
    |||||    
T  34681828 gattt 34681824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 36773291 - 36773187
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||| ||||||||| |||||| ||||||| | |||||||| |  || || ||| ||||||||| |||||||||||||||||| || |||| ||||||    
T  36773291 catcgtgtcacgttcctcctggatcgtgccacaatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacatgccac 36773192  T
Q  114 gattt 118  Q
    |||||    
T  36773191 gattt 36773187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 33162855 - 33162959
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||||||| |||||| |||||| ||||||||| |||||||| |  || || ||| ||||||||| ||||||||||||||| || |  |||| ||||||    
T  33162855 catcgtgccatgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgtttccctacaaacatgccac 33162954  T
Q  114 gattt 118  Q
    |||||    
T  33162955 gattt 33162959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 21801012 - 21800871
Alignment:
Q  18 gtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgatt 117  Q
    |||||| ||||||  ||||| ||||||||| |||||||| || ||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||    
T  21801012 gtgccatgttcctcttggatcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtaccacgttgccctgcaaacgtgccacgatt 21800913  T
Q  118 tctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  21800912 tttcagtgcttcaacatccaattcttgagtcaattttcaaca 21800871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 3039361 - 3039466
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaa-tctgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||||||||    
T  3039361 catcgtgccacgttcctcctggattttgccacgatttttccagcgacaaacccaaaatctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 3039460  T
Q  113 cgattt 118  Q
    ||||||    
T  3039461 cgattt 3039466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 5552 - 5405
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaatttt-ccagcgagaaacccaaa-tctgaaccatccaatcgtgccacgttgccgtggaaacgtgcc 111  Q
    ||||||||||||||| ||||| || |||||||| ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||||| || ||||||| |    
T  5552 catcgtgccacgttctttctgcatcgtgccacgtatttttccagcgacaaacccaaaatctgaaccatctaatcgtgccacgttgccctgcaaacgtgtc 5453  T
Q  112 acgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  5452 atgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 5405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 25796280 - 25796424
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||| ||||| |||||||| || ||||| ||| ||||| |||||||||||||||||||||| || |||||||||||    
T  25796280 catcgtgccacgttcctcctggatcgtgtcacgatttttccagtgacaaaccaaaacctgaatcatccaatcgtgccacgttgccctgcaaacgtgccac 25796379  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaac 158  Q
    ||||| |||  |||||||||| |||||||||||||||||||||||    
T  25796380 gatttttcaccgcttcaacattcaattcttgagtcaattttcaac 25796424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 47650074 - 47650217
Alignment:
Q  18 gtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaa-cgtgccacgat 116  Q
    ||||||||||||| |||||| ||||||  | ||||||| ||| |||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||    
T  47650074 gtgccacgttcctcctggatcgtgccataatttttccaacgacaaacccaaatctgaaccaaccaatcgtgccacgttgccctgcaaatcgtgccacgat 47650173  T
Q  117 ttctcagtgcttcaacatccaattcttgagtcaattttcaacat 160  Q
    | ||||||||||||||||||| || |||||||||||||||||||    
T  47650174 tcctcagtgcttcaacatccactttttgagtcaattttcaacat 47650217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 3715579 - 3715441
Alignment:
Q  22 cacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaa-cgtgccacgatttct 120  Q
    ||||||||| |||||| ||||||| | ||||||||||| |||| ||||||||||||| ||||||||||||||||||| || ||| | ||||||| || ||    
T  3715579 cacgttcctcctggatcgtgccacaatttttccagcgacaaacacaaatctgaaccaaccaatcgtgccacgttgccctgcaaatcatgccacgtttcct 3715480  T
Q  121 cagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3715479 cagtgcttcaacatccaattcttgagtcaattttcaaca 3715441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 28074142 - 28073999
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||||| |||||||| |  || || ||| ||||||||| |||||||||||||||||| || |||||||||||    
T  28074142 catcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 28074043  T
Q  114 gatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
     |||| ||    ||||||||| ||||| ||||||||||||||||||    
T  28074042 aatttttctaaacttcaacat-caatt-ttgagtcaattttcaaca 28073999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 29196858 - 29196962
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||||| |||||||| |  || || |||  |||||||| |||||||||||||||||| || |||||||||||    
T  29196858 catcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaattgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 29196957  T
Q  114 gattt 118  Q
    |||||    
T  29196958 gattt 29196962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 9666894 - 9666997
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    ||||||||||||||||| |||||| ||||||||| |||||||| |  || || ||| ||||||| | |||||||||||||||||| || |||||||||||    
T  9666894 catcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaacccttcaatcgtgccacgttgccctgcaaacgtgccac 9666993  T
Q  114 gatt 117  Q
    ||||    
T  9666994 gatt 9666997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 44700918 - 44701018
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccac 113  Q
    |||||||| |||||||| |||||| ||||||||| |||||||| |  || || ||| ||||||||| |||||||||||||||||| || |||||||||||    
T  44700918 catcgtgctacgttcctcctggatcgtgccacgatttttccagtggtaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 44701017  T
Q  114 g 114  Q
    |    
T  44701018 g 44701018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 24177078 - 24177028
Alignment:
Q  71 ctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgatttctc 121  Q
    ||||| || ||||||||||||||||||| || |||||||||||||||||||    
T  24177078 ctgaaacaaccaatcgtgccacgttgccctgcaaacgtgccacgatttctc 24177028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 29160261 - 29160407
Alignment:
Q  13 acatcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaa-cgtgcc 111  Q
    |||||||||||||||||| |||||| |||||  || ||||| || || ||| ||||| |||||||| ||||||||||||||||||| || ||| ||||||    
T  29160261 acatcgtgccacgttcctcctggatcgtgccttgatttttc-agtgacaaagccaaacctgaaccaaccaatcgtgccacgttgccctgcaaatcgtgcc 29160359  T
Q  112 acgatttctcagtgcttcaacatccaattcttgagtcaattttcaaca 159  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  29160360 acgattcctcagtgcttccacatccaattcttgagtcaattttcaaca 29160407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 20081852 - 20081931
Alignment:
Q  204 agacatcagagctgcatgaagatgacat-atattgattggattttgatgaatgggtatcaattctcactttcttcatctc 282  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  20081852 agacatcagagctgcatgaagatgacatcatattgattggattttgatgaatggttatcaattctcactttcttgatctc 20081931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 24526344 - 24526449
Alignment:
Q  14 catcgtgccacgttccttctggattgtgccacgaattttccagcgagaaacccaaatc-tgaaccatccaatcgtgccacgttgccgtggaaacgtgcca 112  Q
    |||| |||||||||||| |||||| ||||||||| |||||||| || ||||||||| | ||||||||||||||||||||||||||| || ||||||||||    
T  24526344 catcatgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgcca 24526443  T
Q  113 cgattt 118  Q
    ||||||    
T  24526444 cgattt 24526449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 22269464 - 22269374
Alignment:
Q  27 tccttctggattgtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgattt 118  Q
    |||| |||||| ||||||||| |||||||| || || ||||||  ||||||||| ||||||||||||||||| || ||||||||||||||||    
T  22269464 tcctcctggatcgtgccacgatttttccagtgacaa-cccaaacttgaaccatcaaatcgtgccacgttgccctgcaaacgtgccacgattt 22269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 12098250 - 12098329
Alignment:
Q  39 gtgccacgaattttccagcgagaaacccaaatctgaaccatccaatcgtgccacgttgccgtggaaacgtgccacgattt 118  Q
    ||||||||| |||||||| |  || || ||| ||||||||| |||||||| ||||||||| || ||||||||||||||||    
T  12098250 gtgccacgatttttccagtggcaatccaaaaactgaaccattcaatcgtgtcacgttgccctgcaaacgtgccacgattt 12098329  T

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