View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19388_high_3 (Length: 477)
Name: NF19388_high_3
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 47872195 - 47871737
Alignment:
| Q |
1 |
tcaatttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctccgaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47872195 |
tcaatttaagaattgtaagcctctgagggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctctgaaa |
47872096 |
T |
|
| Q |
101 |
gaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47872095 |
gaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccac |
47871996 |
T |
|
| Q |
201 |
taaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871995 |
taaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaat |
47871896 |
T |
|
| Q |
301 |
atagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871895 |
atagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttg |
47871796 |
T |
|
| Q |
401 |
tagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatc |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47871795 |
tagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgatc |
47871737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 100 - 458
Target Start/End: Original strand, 47873446 - 47873804
Alignment:
| Q |
100 |
agaattggtaaagaagcttcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataacca |
199 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47873446 |
agaattggtaaaggagcttcaagtttaagcacctgaatcacttgtcttacagatggcctaaatgaataatttggattggcacaccaaagaccaataacca |
47873545 |
T |
|
| Q |
200 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||| |||| |||||| |
|
|
| T |
47873546 |
ctaaacgttccatttgttcctcatcaaatgcacccccgagttttgtgtctactacttcaagcaaccttcctaatctataaagctcccaaacccaatcaaa |
47873645 |
T |
|
| Q |
300 |
tatagccacttgaccctccttggccttacgatcaattggttttcttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattccttt |
399 |
Q |
| |
|
|||||||| |||| |||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
47873646 |
tatagccatttgatcctccttggcattaagatcaactggttttcttccacttgctaattccaatgaaacaatgccaaagctgtatatatctgattccttt |
47873745 |
T |
|
| Q |
400 |
gtagctttccctgttgtgaaatattcaggagctatataccccatagtcccagctatgat |
458 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
47873746 |
gtagccttccctgttgtgatatattcaggagctatgtaccccatggtcccagctatgat |
47873804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 26 - 452
Target Start/End: Complemental strand, 5821508 - 5821083
Alignment:
| Q |
26 |
agggaaaagaaactggatcaaaaattgtgctcattgttgtagtaggataagttgactcaaacatctcctccgaaagaattggtaaagaagcttcaaattt |
125 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||| ||||||||||||||| | |||||||| |||| |||||||||| || ||||||||| |
|
|
| T |
5821508 |
agggaaaagaaacaggataaaaaattgagctcattgttgcagtaggataagttgattgaaacatcttt---gaaatcattggtaaaggaggttcaaattt |
5821412 |
T |
|
| Q |
126 |
aagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacacc--aaaggccaataaccactaaacgttccatttgttcctcat |
223 |
Q |
| |
|
||| | || |||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5821411 |
aagaaacttaatcacttgtcttacacatggcctaaatgaataatttggattgatacaccataaagtccaataaccactaaacgttccaattgttcctcat |
5821312 |
T |
|
| Q |
224 |
caaatgcacccccgagttttgtgtctaccacttcaagcaaccttccaagtctataaaggtcccagacccgatcaaatatagccacttgaccctccttggc |
323 |
Q |
| |
|
||||| | ||| |||||| ||| || |||||||||||| |||| |||||||| | |||||| || | |||||||||||| |||||| || ||||| |
|
|
| T |
5821311 |
caaatacgtgcccaagttttctgtatattacttcaagcaactttcctagtctatacaagtcccaaacacaatcaaatatagctacttgattatctttggc |
5821212 |
T |
|
| Q |
324 |
cttacgatcaattggttttcttccacttgctaattccaatgaaacaat--accaaaactgtatatatcagattcctttgtagctttccctgttgtgaaat |
421 |
Q |
| |
|
|||||||||| ||||||| ||||||||| | |||| ||| ||||||| | |||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
5821211 |
cttacgatcagttggtttccttccacttaccaattttaataaaacaattcaaaaaaactgtatatatcatattcctttgtagctttccttgttgtgaa-- |
5821114 |
T |
|
| Q |
422 |
attcaggagctatataccccatagtcccagc |
452 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
5821113 |
gttcaggagctatataccacatagtcccagc |
5821083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 36931804 - 36931692
Alignment:
| Q |
118 |
tcaaatttaagcacctgaatcacttgtcttacagatggcctacatgaataatttggattggcacaccaaaggccaataaccactaaacgttccatttgtt |
217 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||| ||||| ||||||||| ||||| ||||||||||||||| || ||| |||||||||| ||||| |
|
|
| T |
36931804 |
tcaaatttgagaacctgaatcacttgtcttatagaaggcctgaatgaataatctggatgaacacaccaaaggccaacaatcaccaaacgttccagttgtt |
36931705 |
T |
|
| Q |
218 |
cctcatcaaatgc |
230 |
Q |
| |
|
|||||||||||| |
|
|
| T |
36931704 |
gctcatcaaatgc |
36931692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 455
Target Start/End: Complemental strand, 36931579 - 36931467
Alignment:
| Q |
343 |
cttccacttgctaattccaatgaaacaataccaaaactgtatatatcagattcctttgtagctttccctgttgtgaaatattcaggagctatatacccca |
442 |
Q |
| |
|
|||||||| |||| ||||||| | || | ||||| ||| |||||||||||||||| |||| || |||| ||||||||||||||| || ||||| ||| |
|
|
| T |
36931579 |
cttccactggctatttccaataacactactccaaagctgaatatatcagattccttggtaggctttcctgatgtgaaatattcaggtgcaatataacccc |
36931480 |
T |
|
| Q |
443 |
tagtcccagctat |
455 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
36931479 |
ttgtcccagctat |
36931467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University