View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_high_4 (Length: 432)
Name: NF19388_high_4
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2507200 - 2507626
Alignment:
| Q |
1 |
tatgcatgtgtacttgactcatccatggtttatattgtgaatcgtggaggttcatgttgcacaaatttaagactttaagaagatttttgaatttgaatat |
100 |
Q |
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| T |
2507200 |
tatgcatgtgtacttgactcatccatggtttatattgtgaatcgtggaggttcatgttgcacaaatttaagactttaagaagatttttgaatttgaatat |
2507299 |
T |
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| Q |
101 |
gtgttccttataaaaatttgacaaattaaggtttaggttcaatggttcattgtcagagacataaaaatgacaca------------tgcattatgattgt |
188 |
Q |
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| T |
2507300 |
gtgttccttataaaaatttgacaaattaaggtttaggttcaatggttcattgtcagagacataaaaatgacacatgcaatgtcacatgcattatcattgt |
2507399 |
T |
|
| Q |
189 |
atagcaatcattcatgtaccaccacccactacatgacccacaccgaagcttccatatacgtttaatagagacaggaacagcaagttaagtctgggacaca |
288 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2507400 |
atagcaatcattcatgtactaccacccactacatgacccacaccgaagcttccatatacgtttaatagagacaggaacagcaagttaagtctgggacaca |
2507499 |
T |
|
| Q |
289 |
acacaagccccacttgggtcactataatttattaatttcaaaagattttatttttcttctttgaaattgatgtatatcctcttctgggagacatcgagat |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2507500 |
acacaagccccacttgggtcactataatttattaatttcaaaagattttatttttcttctttgaaattgatgtatatcctcttgtgggagacatcgagat |
2507599 |
T |
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| Q |
389 |
cgattgataaataagaacagggaatct |
415 |
Q |
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| T |
2507600 |
cgattgataaataagaacagggaatct |
2507626 |
T |
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