View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_low_10 (Length: 318)
Name: NF19388_low_10
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 6145591 - 6145290
Alignment:
| Q |
1 |
tagaagtttcagctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6145591 |
tagaagtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtagtggt |
6145492 |
T |
|
| Q |
101 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcagatcttgcagcaagttcagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6145491 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcctgcaacaactccacttcttggataatcagatcttgcagcaggttcagta |
6145392 |
T |
|
| Q |
201 |
ggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccattgataatgcgaatatttgatccaaaaagtctaagatatg |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145391 |
ggtccagctccagtttgtcctccaatagtcggggtggacgacagacttcttgatcctccattgataatgcgaatatttgatccaaaaagtctaagatatg |
6145292 |
T |
|
| Q |
301 |
ct |
302 |
Q |
| |
|
|| |
|
|
| T |
6145291 |
ct |
6145290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 6152011 - 6151713
Alignment:
| Q |
1 |
tagaagtttcagctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggt |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||| || ||||| ||| |||| ||||||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
6152011 |
tagaagtttcacctctagttaatggatcatgtgatctacttctctttaaccgtgaactagcacgaaacaactcatcatttctagtaccagtagcagtggg |
6151912 |
T |
|
| Q |
101 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcagatcttgcagcaagttcagta |
200 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||| |||| || |||||||| |
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| T |
6151911 |
gttaattccatcgctgaatgatgaaatggaattcacattactactgtttcctgcaacaactccacttctttgaaaatcagatcctgcaacaggttcagta |
6151812 |
T |
|
| Q |
201 |
ggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccattgataatgcgaatatttgatccaaaaagtctaagatat |
299 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| || || | | | |||| | ||||||||||||||||| |||||||| ||||||||||| |||||| |
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| T |
6151811 |
ggtctagctccagtttgtcctccaataaccgggatgaacaatacaattctgggtcctccattgataatgctaatatttgtcccaaaaagtcttagatat |
6151713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6126172 - 6125911
Alignment:
| Q |
1 |
tagaagtttcagctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggt |
100 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
6126172 |
tagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacgaaacaactcatcattcctagtaccaatagtaatggt |
6126073 |
T |
|
| Q |
101 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatcagatcttgcagcaagttcagta |
200 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||| |||| | |||||| | |||||||| |||||| ||||| | ||||| |||||||| |
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| T |
6126072 |
gttaatttcatcgttgaatgacgaaatggaattcacattactattatttcctccaacaaatgcacttctttgataattagatcctccagcaggttcagta |
6125973 |
T |
|
| Q |
201 |
ggtccagctccagtttgtcctccaatagtcggggtggacgacaaacttcttgatcctccatt |
262 |
Q |
| |
|
||| ||||||||||| |||||| |||||| || |||||| || |||||| |||||| |||| |
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|
| T |
6125972 |
agtctagctccagtttatcctccgatagtcaggatggacggcacacttctcgatccttcatt |
6125911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 33802923 - 33803100
Alignment:
| Q |
1 |
tagaagtttcagctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||| || |||| ||||||||||||| |||| |||||||||| |
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|
| T |
33802923 |
tagaagtttcacctctagtgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggt |
33803022 |
T |
|
| Q |
101 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatc |
178 |
Q |
| |
|
|||| || |||||||||||||||||| |||||| |||||||| | |||| | ||||| ||||||||||| ||||||| |
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|
| T |
33803023 |
gttaatttcatcgttgaatgacgaaacggaattagcattactactatttcctacaacatctccacttctttgataatc |
33803100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 33731544 - 33731721
Alignment:
| Q |
1 |
tagaagtttcagctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacgaaacaagtcatcattcctagtaccaatagtagtggt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||| || |||| ||||||||||||| |||| |||||||||| |
|
|
| T |
33731544 |
tagaagtttcccctctagtgaatggatcaggcgatctacttctcttgaatgatgaattagcctgacacaactcatcattcctagcaccagtagtagtggt |
33731643 |
T |
|
| Q |
101 |
gttagttccatcgttgaatgacgaaatggaattcacattactattgtttcgtgcaacaactccacttcttggataatc |
178 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| |||||||| | |||| | ||||| ||||||||||| ||||||| |
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| T |
33731644 |
gttaatttcatcgttgaatgacgaaacagaattagcattactactatttcctacaacatctccacttctttgataatc |
33731721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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