View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_low_12 (Length: 254)
Name: NF19388_low_12
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5446724 - 5446961
Alignment:
| Q |
1 |
tggcttcagcaaatattacctttttctgcgatttactttgaactaccttaacatctattttagtgccgccacttgtgcaaggttttactctaacagctga |
100 |
Q |
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||||||| |||| |||| ||||||||| ||| ||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||| | ||||| |
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| T |
5446724 |
tggcttctacaaagattatctttttctgagatatacttcgaactaccttaacatccattttagtgccaccacttgcgcaaggttttactccttcggctga |
5446823 |
T |
|
| Q |
101 |
tgaagattggttaggcaggttgtctttgtacttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5446824 |
tgaagattggttaggcaggttgcctttgtacttggagctacttttcaaaattgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttc |
5446923 |
T |
|
| Q |
201 |
aatatctacacatcaaaatgaaaataatcattcataac |
238 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
5446924 |
aatatctacgcatcaaaatgaaaataatcattcataac |
5446961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 5436122 - 5436309
Alignment:
| Q |
21 |
tttttctgcgatttactttgaactaccttaacatctattttagtgccgccacttgtgcaaggttttactctaacagctgatgaagattggttaggcaggt |
120 |
Q |
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|||||||| ||||||||||||| ||| |||||||| ||||| || | |||| |||||||| || ||||||| ||||||| | ||||||||| ||| |
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| T |
5436122 |
tttttctgagatttactttgaattactttaacatcgattttcctgatgtcactggtgcaaggcattgctctaactgctgatgcaagttggttaggtcggt |
5436221 |
T |
|
| Q |
121 |
tgtctttgtacttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttcaatatcta |
208 |
Q |
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| T |
5436222 |
tgtctttgttcttggagctacttgcaaaaaatgtatttgtcaaaggctcatgagaggttaaggtatgcttgaggaggttcaatatcta |
5436309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5996569 - 5996783
Alignment:
| Q |
1 |
tggcttcagcaaatattacctttttctgcgatttactttgaactaccttaacatctattttagtgccgccacttgtgcaaggttttactctaacagctga |
100 |
Q |
| |
|
||||||| ||| | |||| ||||||||| ||||||||| | |||| |||||| || |||||| || ||| ||||||| ||||||| | || ||||| |
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| T |
5996569 |
tggcttctgcacagattatctttttctgagatttacttcgcactagcttaacgtccattttaatgtcgcgg---gtgcaagtttttactttgactgctga |
5996665 |
T |
|
| Q |
101 |
tgaagattggttaggcaggttgtctttgtacttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttc |
200 |
Q |
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|| | | ||||| ||| |||||||||||| ||||||||| |||||||||| ||||||||||| |||||| |||||||||||| | || ||||| |||||| |
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| T |
5996666 |
tgcaaactggttgggcgggttgtctttgttcttggagctgcttttcaaaattgtatttgtcagaggctcatgagaggttaaggtgtacttgaggaggttc |
5996765 |
T |
|
| Q |
201 |
aatatctacacatcaaaa |
218 |
Q |
| |
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| |||| ||||||||| |
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| T |
5996766 |
agcatctgtacatcaaaa |
5996783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 5458023 - 5458201
Alignment:
| Q |
30 |
gatttactttgaactaccttaacatctattttagtgccgccacttgtgcaaggttttactctaacagctgatgaagattggttaggcaggttgtctttgt |
129 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||| || | |||| |||||||| ||||| |||| | |||| |||||||||| || | || |||| |
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| T |
5458023 |
gatttactttgaattactttaacatcaattttcttggtgtcactggtgcaaggcgttactttaactgtcgatgcgaattggttaggtgggatttccttgt |
5458122 |
T |
|
| Q |
130 |
acttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttcaatatcta |
208 |
Q |
| |
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||| ||||||||| ||||| |||||||| | |||||| |||||||||||| |||| ||||| |||||||||||||| |
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| T |
5458123 |
tctttgagctacttcccaaaatcgtatttgtgagaggctcatgagaggttaaggtatacttgaggaggttcaatatcta |
5458201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 5631725 - 5631659
Alignment:
| Q |
135 |
gagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttca |
201 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| |||||||||||| | || ||||| ||||||| |
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| T |
5631725 |
gagctacttttcaaaattgtatttgtcagaggctcatgagaggttaaggtgtacttgaggaggttca |
5631659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 5509579 - 5509498
Alignment:
| Q |
126 |
ttgtacttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttcaatatct |
207 |
Q |
| |
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|||| ||| |||||||||| ||||| |||||| || | |||||| |||||||||||| |||| || || ||||||||||||| |
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| T |
5509579 |
ttgttctttgagctactttgcaaaattgtattagtgagaggctcatgagaggttaaggtatacttcaggaggttcaatatct |
5509498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 5488887 - 5488812
Alignment:
| Q |
132 |
ttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaagctatatttgagtaggttcaatatct |
207 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||||| |
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| T |
5488887 |
ttggagctagttgccaaaattgtatttgtcaaaggctcacgagaggttaaggcatacttgagaaggttcaatatct |
5488812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 5993863 - 5994021
Alignment:
| Q |
22 |
ttttctgcgatttactttgaactaccttaacatctattttagtgccgccacttgtgcaa-ggttttactctaacagctgatgaagattggttaggcaggt |
120 |
Q |
| |
|
||||||||||||||||| | |||| |||||| || |||| | || | ||| |||||| || |||||||| || ||||||| | | ||||| || ||| |
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| T |
5993863 |
ttttctgcgatttacttcgcactagcttaacttccatttcaatgtc---actcgtgcaacggctttactctgactgctgatgcaaactggtttggtgggt |
5993959 |
T |
|
| Q |
121 |
tgtctttgtacttggagctacttttcaaaaatgtatttgtcataggctcgtgagaggttaag |
182 |
Q |
| |
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||||||||| || |||| | |||| || || ||||||||| | ||||||||||||||||||| |
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| T |
5993960 |
tgtctttgttctcggagtttctttgcagaattgtatttgttaaaggctcgtgagaggttaag |
5994021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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