View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_low_2 (Length: 481)
Name: NF19388_low_2
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 481
Target Start/End: Original strand, 8005291 - 8005756
Alignment:
| Q |
9 |
tatgtaaaaaggtcaaggtgattctttccttaaaatgaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaatacaatgacatttata |
108 |
Q |
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| T |
8005291 |
tatgtaaaaaggtcaaggtgattctttccttaaaattaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaa--------catttata |
8005382 |
T |
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| Q |
109 |
aaagatggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagagttttagttttggtaaaagaatgtgcaa |
208 |
Q |
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| T |
8005383 |
aaagatggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagagttttagttttggtaaaagaatgtgcaa |
8005482 |
T |
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| Q |
209 |
caattcttttaccaccagctagaaacaaatttgcatgattggctaaggtcattaaggaatagatactttctcacttattcagcctatctaattattgttc |
308 |
Q |
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| T |
8005483 |
aaattcttttaccaccagctagaaacaaatttgcatgattggctaaggtcattaaggaatagatactttctcacttattcagcctatctaattattgttc |
8005582 |
T |
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| Q |
309 |
aaaacaaacctttgattctttatattaatcagttatgtgccaaactaagtaaagataatcattacatgataaaagctaacaaatatatttttcatacagg |
408 |
Q |
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| T |
8005583 |
aaaacaaacctttgattctttatattaatcagttatgtgccaaactaagtaaagataatcattacatgataaaagctaacaaatatatttttcatacagg |
8005682 |
T |
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| Q |
409 |
-nnnnnnnnnnnnnnnnngcagttatagctgtttattgcatgctcaaacagtataataatgttgggcaccagaa |
481 |
Q |
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| T |
8005683 |
aaaaaacaagaaaaaaaagcagttatagctgtttattgcatgctcaaacagtataataatgttgggcaccagaa |
8005756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 49772058 - 49771885
Alignment:
| Q |
9 |
tatgtaaaaaggtcaaggtgattctttccttaaaa-tgaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaatacaatgacatttat |
107 |
Q |
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||||||||||||||||||||||||||| ||||||| | | |||||||| ||||||||| || ||||||||||||||||||||||||||||| |||| | |
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| T |
49772058 |
tatgtaaaaaggtcaaggtgattctttgcttaaaaattagtacaaaaataagtgtaaccatacttgaagcagagtagcttcttaatacaatggcattcac |
49771959 |
T |
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| Q |
108 |
aaaagatggatagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagag |
181 |
Q |
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| T |
49771958 |
aaaagatggatagttaattttggatatcactttgcatgatatccaagggttttaggagaaacatgtgctaagag |
49771885 |
T |
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