View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_low_4 (Length: 467)
Name: NF19388_low_4
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Complemental strand, 4859847 - 4859406
Alignment:
| Q |
11 |
cagagactaatggtcaagcattagtaagcataaatgagcctatgcttaattaagaaattacatttacacttagcaagagcaaaagtagaccaaatttgac |
110 |
Q |
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| T |
4859847 |
cagagactaatggtcaagcattagtaagcataaatgagcctatgcttaattaagaaattacatttacacttagcaagagcaaaagtagaccaaatttgac |
4859748 |
T |
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| Q |
111 |
agtgagttg-ttgttactaagcatatacactttaagctaaggatttacatgagaaaatgaccttacctcaggttcatcaatagtccatggaagaccttgt |
209 |
Q |
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| T |
4859747 |
agtgagtttcttgttactaagcatatacactttaagctaaagatttacatgagaaaatgaccttacctcaggttcatcaatagtccatggaagaccttgt |
4859648 |
T |
|
| Q |
210 |
gcaataggaattctcatcttctcttcttctgtcaaaacctcctttaccttcttcatcaactgttcctctttcatctttcccctttgctacaatagcatta |
309 |
Q |
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| T |
4859647 |
gcaataggaattctcatcttctcttcttctgtcaaaacctcctttacctttttcatcaactgttcctctttcatctttcccctttgctacaatagcatta |
4859548 |
T |
|
| Q |
310 |
tagccaatgcatcaccaatatagccactgaaaaatttgaagaaactttcaatgaaaaaaccaattatttgtatcatcaattacctcagtccttagcttga |
409 |
Q |
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| T |
4859547 |
tagccaatgcatcaccaatatagccactgaaaaatttgaagaaactttcaatgaaaaaaccaattatttgtatcatcaattacctcagtccttagcttga |
4859448 |
T |
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| Q |
410 |
atggtttctggctagtgacttttagcttctgcttcttcttcc |
451 |
Q |
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| T |
4859447 |
atggtttctggctagtgacttttagcttctgcttcttcttcc |
4859406 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 3712441 - 3712391
Alignment:
| Q |
170 |
ccttacctcaggttcatcaatagtccatggaagaccttgtgcaataggaat |
220 |
Q |
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| T |
3712441 |
ccttacctcaggttcatctgttgtccaaggaagaccttgtgcaacaggaat |
3712391 |
T |
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