View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19388_low_6 (Length: 395)
Name: NF19388_low_6
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 28011937 - 28011569
Alignment:
| Q |
15 |
cacagacaactcacttctctatatttaagatgaacgagattttgccactagattatttgacnnnnnnn-caaacttattactgacctggatcatctctaa |
113 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28011937 |
cacagacagttcacttctctgcatttaagatgaacgagtttttgccactagactacttgacaaaaaaaacaaacttattactgacctggatcatctctaa |
28011838 |
T |
|
| Q |
114 |
cagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttcccttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28011837 |
cagtggcattaacggtgtaaccatcttcaaggagtctcttaataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttcccttc |
28011738 |
T |
|
| Q |
214 |
ttccatta--acacactcttgcaaaatatttttagtgtacaccactcacatatccctcttttatatacagtcggttacctttttcgtgcaagactacatt |
311 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28011737 |
ttccattactacactctcttgcaaaatatttttagtgtacactactcacatatccctcttttatatacagtcggttaactttttcgtgcaagactacatt |
28011638 |
T |
|
| Q |
312 |
attaattatttattctaaaatggtactattatgactacacacaaacattcaatattggcacgttcatga |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28011637 |
attaattatttattctaaaatggtactattatgactacacacaaacattcaatattggcacgttcatga |
28011569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 28002139 - 28001982
Alignment:
| Q |
87 |
cttattactgacctggatcatctctaacagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctcc |
186 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28002139 |
cttattcctgacctggatcatctctaacagtggcattaacagtgtaaccatcttcaagaagtctcttaataatccatgaaccaagaaaccctgtacctcc |
28002040 |
T |
|
| Q |
187 |
agtcacacaaactcttcctttcccttcttccattaacacactcttgcaaaatattttt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28002039 |
agtcacacaaactcttcctttcccttcttccattaacacactcctgcaaaatattttt |
28001982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 27958155 - 27958020
Alignment:
| Q |
109 |
tctaacagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttc |
208 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27958155 |
tctaacagtggtattaacagtgtaaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaaactcttcctttc |
27958056 |
T |
|
| Q |
209 |
ccttcttccattaacacactcttgcaaaatattttt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27958055 |
ccttcttccattaacacactcttgcaaaatattttt |
27958020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 27991569 - 27991445
Alignment:
| Q |
97 |
acctggatcatctctaacagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctccagtcacacaa |
196 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27991569 |
acctggatcagctctaacagtggtattaacagtgtaaccatcttcaaggagtctcttaataatccatgaaccaataaaccctgtacctccagtcacacaa |
27991470 |
T |
|
| Q |
197 |
actcttcctttcccttcttccatta |
221 |
Q |
| |
|
||||||||||| || |||||||||| |
|
|
| T |
27991469 |
actcttccttttccctcttccatta |
27991445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 27983972 - 27983839
Alignment:
| Q |
109 |
tctaacagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctccagtcacacaaactcttcctttc |
208 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
27983972 |
tctaacggtggtgttaacagtgtaaccatcttcaagaagtctcttgataatccatgaaccaataaacccagtacctccagttacacaaactcttcctttc |
27983873 |
T |
|
| Q |
209 |
ccttcttccatta--acacactcttgcaaaatat |
240 |
Q |
| |
|
|||| |||||| | |||| |||||||||||||| |
|
|
| T |
27983872 |
cctttttccatcaccacactctcttgcaaaatat |
27983839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 27943674 - 27943558
Alignment:
| Q |
97 |
acctggatcatctctaacagtggcattaacggtgtaaccatcttcaaggagtctcttgataatccatgaaccaagaaaccctgtacctccagtcacacaa |
196 |
Q |
| |
|
|||||||||| |||||| ||||| ||| || | ||| |||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27943674 |
acctggatcagctctaatagtggtattgacagagtatccattttcaagaagactcttgataatccatgaaccaagaaaacctgtacctccagtcacacaa |
27943575 |
T |
|
| Q |
197 |
actcttcctttcccttc |
213 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
27943574 |
actcttccttttccttc |
27943558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 367
Target Start/End: Complemental strand, 27998171 - 27998089
Alignment:
| Q |
287 |
tacctttttcgtgcaagactacattattaattatttattctaaaatggtactattatgact--acacacaaacattcaatatt |
367 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||||| |||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
27998171 |
tacctttttcgtgcaagactatatcattcattatttattctaaaattgtactattttgactccacacacaaaaattcaatatt |
27998089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 231
Target Start/End: Complemental strand, 27998317 - 27998279
Alignment:
| Q |
193 |
acaaactcttcctttcccttcttccattaacacactctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27998317 |
acaaactcttcctttcccttcttccattatcacactctt |
27998279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University