View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19388_low_8 (Length: 337)
Name: NF19388_low_8
Description: NF19388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19388_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 28 - 193
Target Start/End: Original strand, 34354238 - 34354417
Alignment:
| Q |
28 |
gaggaagattgtttgtttcaagagtagtctcacatttgatggaaatgtcaaaagtag---------------aaaaagtggatgtttgtatatgtgaaat |
112 |
Q |
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| T |
34354238 |
gaggaagattgtttgtttcaagagtagtctcacatttgatggaaatgtcaaaagtagaaaaagtggatgtagaaaaagtggatgtttgtatatgtgaaat |
34354337 |
T |
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| Q |
113 |
ggtgaagatgcattatttctctaataatggttgcttttaaactcaatataaattatcttcaaactcctctaataactcaac |
193 |
Q |
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| T |
34354338 |
ggtgaagatgcattatttctctaataatggttgctttt-aactcaatataaattatcttcaaactcctctaataactcaac |
34354417 |
T |
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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 34354482 - 34354551
Alignment:
| Q |
259 |
aataagagtgaagtaatagatgtaataggttggtgggtnnnnnnnatcacatgatgtatataaatattctt |
329 |
Q |
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| T |
34354482 |
aataagagtgaagtaatagatgtaataggttggtgggt-ggggggatcacatgatgtatataaatattctt |
34354551 |
T |
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