View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19389_high_1 (Length: 512)
Name: NF19389_high_1
Description: NF19389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19389_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 123 - 495
Target Start/End: Original strand, 43082904 - 43083276
Alignment:
| Q |
123 |
taggcaatttctacgaacatgcatgctaaagtagannnnnnnnnnnnggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
222 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082904 |
taggcaatttctacgaacatacatgctaaagtagattttttatttttggaggaatttttgcatttcaccaacacaacaacgataagcacttctaaccaag |
43083003 |
T |
|
| Q |
223 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083004 |
tacatttcattattctcctattttcattttgtacggattcaaaaaagagtttctacgtactctctgcaacactttttcaacattttccagacttaccaaa |
43083103 |
T |
|
| Q |
323 |
ccatgaaacataccaacattttgtactatgactatcgaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaa |
422 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083104 |
ccatgaaacataccaacagttcgtactatgactatccaagaagccacttgcgccttaatcaaaactacttcaccaaacacactcagaacgttttatacaa |
43083203 |
T |
|
| Q |
423 |
aggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtat |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083204 |
aggaaactgctaataatatctttaggatattcattaataaaatatggatgtgatgtgtataaaaatagtgtat |
43083276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43082805 - 43082901
Alignment:
| Q |
1 |
atatagttccaatttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
97 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43082805 |
atatagttccattttcaatcatttgccaaaaggatatgcatgttatctttaatatcggaatcacatagcacacaattatatggacaatttacccctc |
43082901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University